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Publications

This page gives a not necessarily complete list of publications by the Algorithms cluster from 2005 onwards.
Please see this page for a list of all publications before 2005.

| 2012 | 2011 | 2010 | 2009 | 2008 | 2007 | 2006 | 2005 |

2012

  • G. Ausiello, H.J. Hoogeboom, J. Karhumäki, I. Petre & A. Salomaa (Eds.): Magic in Science, Theoretical Computer Science 429. Amsterdam, Elsevier (2012) doi:10.1016/j.tcs.2011.12.019
  • H. Blockeel, T. Calders, E. Fromont, B. Goethals, A. Prado & C. Robardet: An inductive database system based on virtual mining views, Journal on Data Mining Knowledge Discovery (2012) doi:10.1007/s10618-011-0229-7
  • R. Brijder, A. Ehrenfeucht & G. Rozenberg: Representing Reaction Systems by Trees. In: M.J. Dinneen, B. Khoussainov & A. Nies (Eds.), Computation, Physics and Beyond, International Workshop on Theoretical Computer Science, WTCS 2012, Lecture Notes in Computer Science 7160: 330-342, Springer (2012) doi:10.1007/978-3-642-27654-5_26
  • M.T.M. Emmerich, A.H. Deutz & J.W. Kruisselbrink: The Core-Based Hypervolume Indicator: Definition, Computation and Interpretation, LIACS Technical Report 2012-04, LIACS, Universiteit Leiden (2012)
  • M. Gheorghe, G. Paun, G. Rozenberg, A. Salomaa & S. Verlan (Eds.): Membrane Computing 12th International Conference, CMC 2011, Lecture Notes in Computer Science 7184. Heidelberg, Springer Verlag (2012) doi:10.1007/978-3-642-28024-5
  • L. Pan, Jun Wang & H.J. Hoogeboom: Asynchronous extended spiking neural P systems with Astrocytes. In: M. Gheorghe, G. Paun, G. Rozenberg, A. Salomaa & S. Verlan (Eds.), Membrane Computing, 12th International Conference, CMC 2011, Lecture Notes in Computer Science 7184: 243-246, Springer Verlag (2012) doi:10.1007/978-3-642-28024-5_17
  • G. Rozenberg, T.H.W. Bäck & J.N. Kok (Eds.): Handbook of Natural Computing. Heidelberg, Germany, Springer (2012)
  • J. Vanschoren, H. Blockeel, B. Pfahringer & G. Holmes: Experiment databases, A new way to share, organize and learn from experiments, Machine Learning 87: 127-158 (2012) doi:10.1007/s10994-011-5277-0

2011

  • A. Ehrenfeucht, H.C.M. Kleijn, M. Koutny & G. Rozenberg: Relevance of Entities in Reaction Systems. In: , Lecture Notes in Computer Science: to appear, Springer (2012)
  • F. Bernardini, R. Brijder, M. Cavaliere, G. Franco, H.J. Hoogeboom & G. Rozenberg: On aggregation in multiset-based self-assembly of graphs, Natural computing 10: 17-38 (2011) doi:10.1007/s11047-010-9183-3
  • H. Blockeel: Bias Specification Language. In: Encyclopedia of Machine Learning 1: 90-100 (2011)
  • H. Blockeel: Hypothesis Space. In: Encyclopedia of Machine Learning 1: 511-513 (2011)
  • H. Blockeel: Hypothesis language. In: C. Sammut & G. Webb (Eds.), Encyclopedia of Machine Learning: 507-511, Springer (2011)
  • H. Blockeel: Statistical relational learning. In: M. Bianchini, M. Maggini & L. Jain (Eds.), Handbook of Neural Information Processing (2011)
  • H. Blockeel, K. Borgwardt, L. De Raedt, P. Domingos, K. Kersting & X. Yan: Guest editorial to the special issue on inductive logic programming mining and learning in graphs and statistical relational learning, Machine Learning 83: 133-135 (2011)
  • H. Blockeel, T. Calders, E. Fromont, B. Goethals, A. Prado & C. Robardet: A practical comparative study of data mining query languages. In: S. Dzeroski, B. Goethals & P. Panov (Eds.), Inductive Databases and Constraint-Based Data Mining: 59-77, Springer (2011)
  • H. Blockeel, T. Calders, E. Fromont, B. Goethals, A. Prado & C. Robardet: Inductive querying with virtual mining views. In: S. Dzeroski, B. Goethals & P. Panov (Eds.), Inductive Databases and Queries: Constraint-Based Data Mining: 265-287, Springer (2011)
  • R. Brijder & H. Blockeel: Characterizing compressibility of disjoint subgraphs with NLC grammars. In: Proceedings Fifth International conference on Language and Automata Theory and Applications (LATA 2011), Lecture notes in Computer Science 6638: 167-178 (2011)
  • R. Brijder, A. Ehrenfeucht, M. Main & G. Rozenberg: A tour of reaction systems, International Journal of Foundations of Computer Science 22: 1499-1517 (2011)
  • R. Brijder, A. Ehrenfeucht & G. Rozenberg: Reaction Systems with Duration. In: A. Kelemen & J. Kelemen (Eds.), Computation, Cooperation, and Life, Lecture Notes in Computer Science 6610: 191-202. Heidelberg, Springer Verlag (2011) doi:10.1007/978-3-642-20000-7_16
  • R. Brijder & H.J. Hoogeboom: Nullity Invariance for Pivot and the Interlace Polynomial, Linear Algebra and Its Applications 435: 277-288 (2011) doi:10.1016/j.laa.2011.01.024
  • R. Brijder & H.J. Hoogeboom: The Group Structure of Pivot and Loop Complementation on Graphs and Set Systems, European Journal of Combinatorics 32: 1353-1367 (2011) doi:10.1016/j.ejc.2011.03.002
  • T.H.W. Bäck: Evolution strategies: basic introduction. In: Proceedings 13th Annual Genetic and Evolutionary Computation Conference, GECCO 2011: 875-898, ACM (2011)
  • T.H.W. Bäck, L. Kessler & I. Heinle: Evolutionary strategies for identification and validation of material model parameters for forming simulations. In: Proceedings 13th Annual Genetic and Evolutionary Computation Conference, GECCO 2011: 1779-1786, ACM (2011)
  • R. Cachucho & A. Knobbe: A Hierarchical Approach for Activity Recognition from Accelerometer Data Stream. In: Proceedings Dutch-Belgian Database Day (2011)
  • R. Cachucho, A. Knobbe, J.M. Moreira & J. Gama: Towards a Semi-Supervised Classifier for Activity Recognition from Accerelometer Data. In: PhD Spotlight Session late-breaking results, IDA 2011 (2011)
  • C. Calude, J. Kari, I. Petre & G. Rozenberg (Eds.): Unconventional Computation, 10 International Conference, UC 2011, Lecture Notes in Computer Science 6714. Heidelberg, Springer Verlag (2011) doi:10.1007/978-3-642-21341-0
  • C. Calude, G. Rozenberg & A. Salomaa (Eds.): Rainbow of Computer Science, Lecture Notes in Computer Science 6570. Heidelberg, Springer Verlag (2011) doi:10.1007/978-3-642-19391-0
  • W. Duivesteijn & A. Knobbe: Exploiting False Discoveries - Statistical Validation of Patterns and Quality Measures in Subgroup Discovery. In: Proceedings IEEE International Conference on Data Mining (ICDM 2011) (2011)
  • A. Ehrenfeucht, J. Kleijn, M. Koutny & G. Rozenberg: Relevance of Entities in Reaction Systems, School of Computing Science Technical Report Series 1295. Newcastle upon Tyne, UK, School of Computing Science, University of Newcastle upon Tyne (2011)
  • A. Ehrenfeucht, M. Main & G. Rozenberg: Functions defined by reaction systems, International Journal of Foundations of Computer Science 22: 167-178 (2011)
  • A. Ehrenfeucht & G. Rozenberg: A Formal Framework for Bioprocesses in Living Cells. In: Unconventional Computing, Lecture notes in Computer Science 6714: 10, Springer Verlag (2011) doi:10.1007/978-3-642-21341-0_4
  • M.T.M. Emmerich, A.H. Deutz & J.W. Klinkenberg: Hypervolume-based Expected Improvement: Monotonicity Properties and Exact Computation. In: roceedings on the International Conference on Evolutionary Computation, IEEE Press (2011)
  • M.T.M. Emmerich, A.H. Deutz & J.W. Klinkenberg: Hypervolume-based expected improvement: Monotonicity properties and exact computation. In: Proceedings of IEEE Congress on Evolutionary Computation (CEC 2011): 2147-2154, IEEE (2011)
  • M.T.M. Emmerich, A.H. Deutz & J.W. Kruisselbrink: On Quality Indicators for Finite Level-Set Representations. In: EVOLVE 2011 A bridge between Probability, Set Oriented Numerics and Evolutionary Computation (2011)
  • M.T.M. Emmerich & C.M. Fonseca: Computing hypervolume contributions in low dimensions: asymptotically optimal algorithm and complexity results. In: EMO'11: Proceedings of the 6th international conference on Evolutionary multi-criterion optimization: 121-135, Springer (2011)
  • P. Frisco & H.J. Hoogeboom: P systems and topology: some suggestions for research, International Journal of Foundations of Computer Science 22: 179-190 (2011) doi:10.1142/S0129054111007939
  • A. Kentsch, W.A. Kosters, P.W.H. van der Putten & F.W. Takes: Exploratory Recommendations using Wikipedia's Linking Structure. In: Proceedings of 20th Belgian Netherlands Conference on Machine Learning (Benelearn): 61-68 (2011)
  • J. Kleijn, M. Koutny, M. Pietkiewicz-Koutny & G. Rozenberg: Classifying Boolean Nets for Region-based Synthesis. In: J. Desel & A. Yakovlev (Eds.), Proceedings of the Workshop on Applications of Region Theory 2011, CEUR Workshops proceedings 725: 5-21 (2011)
  • H.C.M. Kleijn, M. Koutny & G. Rozenberg: Petri Nets and Bio-Modelling and how to benefit from their synergy. In: Fifth Workshop on Membrane Computing and Biologically Inspired Process Calculi (MeCBIC 2011). Fontainebleau, France (2011) arxiv:1108.3422
  • J. Kleijn, M. Koutny & G. Rozenberg: Petri Nets for Biologically Motivated Computing, School of Computing Science Technical Report Series 1284. University of Newcastle upon Tyne, UK, School of Computing Science, University of Newcastle upon Tyne (2011)
  • H.C.M. Kleijn, M. Koutny & G. Rozenberg: Petri Nets for Biologically Motivated Computing, Scientific Annals of Computer Science 21: 199-225 (2011)
  • A. Knobbe, A. Feelders & D. Leman: Exceptional Model Mining. In: D. Holmes & L. Jain (Eds.), Data Mining: Foundations and Intelligent Paradigms 2: 183-198, Springer (2011)
  • A. Knobbe, P. Hoogestijn & D. Kingma: A Feature Construction and Classification Approach to Pixel Annotation. In: Proceedings 20th Annual Belgian-Dutch Conference on Machine Learning (BENELEARN 2011): 69-79 (2011)
  • J.N. Kok, A. Knobbe, H. Blockeel, B. Obladen & E. Koenders: Large Data Stream Processing for Bridge Management Systems. In: Proceedings First Middle East Conference on Smart Monitoring, Assessment and Rehabilitation of Civil Structures (SMAR 2011) (2011)
  • J.W. Kruisselbrink, M.T.M. Emmerich & T.H.W. Bäck: An Archive Maintenance Scheme for Finding Robust Solutions. In: Parallel Problem Solving from Nature (PPSN XI), Lecture Notes in Computer Science 6238: 214-223, Springer (2011) doi:10.1007/978-3-642-15844-5_22
  • J.W. Kruisselbrink, M.T.M. Emmerich, A.H. Deutz & T.H.W. Bäck: Exploiting Overlap When Searching for Robust Optima. In: Parallel Problem Solving from Nature (PPSN XI), Lecture Notes in Computer Science 6238: 63-72, Springer (2011) doi:10.1007/978-3-642-15844-5_7
  • J.W. Kruisselbrink, Rui Li, E. Reehuis, J. Eggermont & T.H.W. Bäck: On the Log-Normal Self-Adaptation of the Mutation Rate in Binary Search Spaces. In: Proceedings of the 13th Annual Conference on Genetic and Evolutionary Computation, GECCO'11: 893-900, ACM (2011)
  • J.W. Kruisselbrink, E. Reehuis, A.H. Deutz, T.H.W. Bäck & M.T.M. Emmerich: Using the uncertainty handling CMA-ES for finding robust optima. In: Proceedings of the 13th annual conference on Genetic and evolutionary computation: 877-884, ACM (2011) doi:10.1145/2001576.2001696
  • M. (Matthijs) Leeuwen & A. Knobbe: Non-Redundant Subgroup Discovery in large and Complex Data. In: Proceedings Machine Learning and Knowledge Discovery in Databases (ECML PKDD 2011), Lecture notes in Computer Science 6913 (2011)
  • Rui Li, M.T.M. Emmerich, J. Eggermont, T.H.W. Bäck, J. Dijkstra, H. Reiber & M. Schuetz: Mixed Integer Evolution Strategies for Parameter Optimization, Evolutionary Computation Journal (2011)
  • Rui Li, R. Etemaadi, M.T.M. Emmerich & M.R.V. Chaudron: An evolutionary multiobjective optimization approach to component-based software architecture design. In: Proceedings IEEE Congress on Evolutionary Computation (CEC 2011): 432-439, IEEE (2011) doi:10.1109/CEC.2011.5949650
  • Rui Li, R. Etemaadi, M.T.M. Emmerich & M.R.V. Chaudron: Automated Design of Software Architectures for Embedded Systems using Evolutionary Multiobjective Optimization. In: Proceedings Workshop on Applied Combinatorial Optimization (2011)
  • M. Meeng & A. Knobbe: Flexible Enrichment with Contata (Software Demo). In: Proceedings 20th Annual Belgian-Dutch Conference on Machine Learning (BENELEARN 2011): 117-120 (2011)
  • M. Meeng, A. Knobbe, P.-B. 't Hoen & K. Willems van Dijk: Literature-Based Enrichment of Experimental Results (Software Demo). In: Proceedings International Symposium on Integrative Bioinformatics 2011 (2011)
  • S. Miao, A. Knobbe, J. Vanschoren, U. Vespier, A. Koopman, R. Cachucho & Xiaoyun Chen: A Range of Data Mining Techniques to Correlate Multiple Sensor Types. In: Proceedings Dutch-Belgian Database Day (2011)
  • L. Pan, Jun Wang & H.J. Hoogeboom: Limited Asynchronous Spiking Neural P Systems, Fundamenta Informaticae 110: 271-293 (2011) doi:10.3233/FI-2011-543
  • E. De Paula Costa, C. Vens & H. Blockeel: Identification and Classification of Protein Subfamilies using To-Down Phylogenetic Tree Reconstruction. In: Proceedings European Conference on Computational Biology (2011)
  • E. De Paula Costa, C. Vens & H. Blockeel: Protein Subfamily Identification using Clustering Trees. In: Proceedings 20th Belgian Dutch Conference on Machine Learning (BENELEARN): 105-106 (2011)
  • B. Piccart, A. Georges, H. Blockeel & L. Eeckhout: Ranking Commercial Machines Through Data Transposition. In: Proceedings IEEE International Symposium on Workload Characterization (IISWC): 3-14 (2011)
  • P.W.H. van der Putten, C. Veenman, J. Vanschoren, M. Israel & H. Blockeel (Eds.): Proceedings of the 20th Annual Belgian-Dutch Conference on Machine Learning (BENELEARN 2011). The Hague, Universiteit Leiden (2011)
  • D. Radosavljevik, P.W.H. van der Putten & K. Kyllesbech Larsen: Customer Satisfaction and Network Experience in Mobile Telecommunications. In: Proceedings 20th Annual Belgian-Dutch Conference on Machine Learning (BENELEARN 2011): 91-92 (2011)
  • H. Rahmani, H. Blockeel & A. Bender: Collaboration-Based Function Prediction in Protein-Protein Interaction Networks. In: Advances in Intelligent Data Analysis X - 10th Internationl Symposium, Lecture notes in Computer Science 7014: 318-327, Springer (2011)
  • H. Rahmani, H. Blockeel & A. Bender: Interaction-based feature selection for predicting cancer-related proteins in protein-protein interaction networks. In: Proceedings Fifth International Workshop on Machine Learning in System Biology (2011)
  • S. Ray, S. Scott & H. Blockeel: Multi-instance learning. In: C. Sammut & G. Webb (Eds.), Encyclopedia of Machine Learning: 701-710, Springer (2011)
  • E. Reehuis, J.W. Kruisselbrink, M. Olhofer, L. Graenig, B. Sendhoff & T.H.W. Bäck: Model-guided Evolution Strategies for Dynamically Balancing Exploration and Exploitation. In: Proceedings of the 10th International Conference on Artificial Evolution, EA 2011: 306-317 (2011)
  • E. Reehuis, J.W. Kruisselbrink, A.H. Deutz, T.H.W. Bäck & M.T.M. Emmerich: Multiobjective optimization of water distribution networks using SMS-EMOA. In: Proceedings Evolutionary and Deterministic Methods for Design, Optimization and Control: 269-279, CIMNE (2011)
  • M. Schraagen: Complete coverage for approximate string matching in record linkage using bit vectors. In: Proceedings of the 23rd IEEE International Conference on Tools with Artificial Intelligence ICTAI 2011: 740-747 (2011)
  • M. Schraagen & G. Bloothooft: A qualitative evaluation of phoneme-to-phoneme technology. In: Proceedings of the 12th Annual Conference of the International Speech Communication Association, Interspeech 2011: 2321-2324 (2011)
  • M. Schraagen & H.J. Hoogeboom: Predicting record linkage potential in a family reconstruction graph. In: P. De Causmaecker (Ed.), Proceedings of 23rd Benelux Conference on Artificial Intelligence (BNAIC 2011): 199-206 (2011)
  • L. Sella, M.T.M. Emmerich & S.C. Hille: Simulations of Signaling Networks in B. Subtilis. In: Proceedings 8th European Conference on Mathematical and Theoretical Biology and Annual Meeting of the Society for Mathematical Biology (2011)
  • J. Struyf & H. Blockeel: Relational learning. In: C. Sammut & G. Webb (Eds.), Encyclopedia of Machine Learning: 851-857, Springer (2011)
  • F.W. Takes: Afstanden in Online Sociale Netwerken, Eureka! 33: 8-11 (2011)
  • F.W. Takes & W.A. Kosters: Determining the Diameter of Small World Networks. In: Proceedings of 20th ACM Conference on Information and Knowledge Management (CIKM 2011): 1191-1196 (2011) doi:10.1145/2063576.2063748
  • F.W. Takes & W.A. Kosters: Identifying Prominent Actors in Online Social Networks using Biased Random Walks. In: Proceedings of 23rd Benelux Conference on Artificial Intelligence (BNAIC 2011): 215-222 (2011)
  • O. do Tragante, D. Fierens & H. Blockeel: Instance-level accuracy versus bag-level accuracy in multi-instance learning. In: Proceedings 22nd Benelux Conference on Artificial Intelligence (BNAIC) (2011)
  • W. Uwents, G. Monfardini, H. Blockeel, M. Gori & F. Scarselli: Neural Networks for Relational Learning: An experimental comparison, Machine Learning 82: 315-349 (2011)
  • U. Vespier, A. Knobbe, J. Vanschoren & S. Miao: InfraWatch: modeling bridge behavior by event recognition in sensor measurements. In: Proceedings SMiLee 2010 (2011)
  • U. Vespier, A. Knobbe, J. Vanschoren, S. Miao, A. Koopman, B. Obladen & C. Bosma: Traffic Events Modeling for Structural Health Monitoring. In: Advances in Intelligent Data Analysis X - 10th International Symposium, IDA 2011, Lecture notes in Computer Science 7014: 376-387, Springer (2011)
  • J.K. Vis, W.A. Kosters & K.J. Batenburg: Discrete Tomography: A Neural Network Approach. In: Proceedings of 23rd Benelux Conference on Artificial Intelligence (BNAIC 2011): 328-335 (2011)
  • T Wagner, M.T.M. Emmerich, A.H. Deutz & W. Ponweiser: On Expected-Improvement Criteria for Model-based Multi-objective Optimization. In: Parallel Problem Solving from Nature (PPSN XI), Lecture Notes in Computer Science: 718-727, Springer (2011)
  • Jun Wang: Spiking Neural P Systems. Leiden University promotor: prof.dr. J.N. Kok & dr. H.J. Hoogeboom
  • M. Witsenburg & H. Blockeel: Improving the accuracy of similarity measures by using link information. In: Proceedings International Symposium on Methodologies for Intelligent Systems, Lecture notes in Computer Science, Springer (2011)
  • M. Witsenburg & H. Blockeel: K-means based approaches to clustering nodes in annotated graphs. In: Proceedings International Symposium on Methodologies for Intelligent Systems, Lecture Notes in Computer Science, Springer (2011)

2010

  • H. Blockeel, B. Piccart, H. Rahmani & D. Fierens: Three complementary approaches to context aware movie recommendation. In: Proceedings of the Workshop on Context-Aware Movie Recommendation: 57-60, ACM (2010)
  • H. Blockeel, H. Rahmani & M. Witsenburg: On the importance of similarity measures for planning to learn. In: P. Brazdil, A. Bernstein & J. Kietz (Eds.), 19th European Conference on Artificial Intelligence, 3rd Planning to Learn workshop (PlanLearn-2010): 69-74 (2010)
  • H. Blockeel & M. Witsenburg: Exploiting homophily in unsupervised learning. In: Lorentz Workshop on Mining Patterns and Subgroups (2010)
  • P. Bonizzoni, G. Paun, G. Rozenberg & C. Zandron (Eds.): Models and Algorithms for Natural Processes, Natural Computing Journal 9. USA, Springer (2010)
  • R. Breukelaar: Interaction and Evolutionary Algorithms. Leiden University promotor: prof dr T.H.W. Bäck & prof.dr. J.N. Kok
  • R. Brijder, A. Ehrenfeucht & G. Rozenberg: A Note on Causalities in Reaction Systems, Electronic Communications of EASST 30 (2010)
  • R. Brijder & H.J. Hoogeboom: Combining Overlap and Containment for Gene Assembly in Ciliates, Theoretical Computer Science 411: 897-905 (2010) doi:10.1016/j.tcs.2009.07.047
  • R. Brijder & H.J. Hoogeboom: Maximal Pivots on Graphs with an Application to Gene Assembly, Discrete Applied Mathematics 158: 1977-1985 (2010) doi:10.1016/j.dam.2010.08.030
  • R. Brijder & H.J. Hoogeboom: Pivot and Loop Complementation on Graphs and Set Systems. In: J. Kratochvil & A. Li (Eds.), 7th Annual Conference on Theory and Applications of Models of Computation (TAMC 2010), Lecture Notes in Computer Science 6108: 151-162, Springer Verlag (2010) doi:10.1007/978-3-642-13562-0_15
  • R. Brijder, M. Langille & I. Petre: Extended Strings and Graphs for Simple Gene Assembly, Theoretical Computer Science 411: 730-738 (2010)
  • T.H.W. Bäck, C. Engels, A.J. Gaul & H. Spitzer: Optimales Asset Management, Energiewirtschaftliche Tagesfragen 1/2: 78-81 (2010)
  • T.H.W. Bäck, J. Knowles & O.M. Shir: Experimental optimization by evolutionary algorithms. In: GECCO (Companion): 2897-2916 (2010)
  • C. Calude, M. Hagiya, K. Morita, G. Rozenberg & J. Timmis (Eds.): Unconventional Computation, 9th International Conference, UC 2010, Lecture Notes in Computer Science 6079. Heidelberg, Springer Verlag (2010) doi:10.1007/978-3-642-13523-1
  • F.R. Datema, A. Moya, P. Krause, T.H.W. Bäck, L. Willmes, R.J. Baatenburg De Jong & H.M. Blom: Random Survivial Forests and Cox Proportional Hazard Regression in Head and Neck Cancer Survivial Analysis, Head & Neck (2010) doi:10.1002/hed.21698
  • M.R. Doddareddy, G.J.P. van Westen, Eelke van der Horst, Julio E. Peironcely, Frans Corthals, A.P. IJzerman, M.T.M. Emmerich, Jeremy L. Jenkins & Andreas Bender: Chemogenomics: Looking at biology through the lens of chemistry, Statistical Analysis and Data Mining 2: 149-160 (2010)
  • W. Duivesteijn, A. Knobbe & A. Feelders: Subgroup Discovery meets Bayesian networks: an Exceptional Model Mining approach. In: Proceedings ICDM 2010 (2010)
  • A. Ehrenfeucht, M. Main & G. Rozenberg: Combinatorics of life and death for reaction systems, International Journal of Foundations of Computer Science 21: 345-356 (2010)
  • A. Ehrenfeucht & G. Rozenberg: Reaction Systems: A Formal Framework for Processes Based on Biochemical Interactions, Electronic Communications of EASST 30 (2010)
  • A. Ehrenfeucht & G. Rozenberg: Reaction Systems: A Model of Computation Inspired by Biochemistry. In: Developments in Language Theory 2010, Lecture Notes in Computer Science 6224: 1-3, Springer (2010) doi:10.1007/978-3-642-14455-4_1
  • M.T.M. Emmerich, T.H.W. Bäck & R. Li: Improving Medical Image Analysis by Optimization
  • M.T.M. Emmerich, A.H. Deutz, R. Li & J.W. Kruisselbrink: Getting lost or getting trapped: on the effect of moves to incomparable points in multiobjective hillclimbing. In: GECCO (Companion): 1963-1966 (2010)
  • M.T.M. Emmerich & A.H. Deutz: Variance Monotonicity of the Expected Improvement of the 2D Hypervolume in Pareto Optimization, LIACS Technical Report 2010-03. Leiden, Universiteit Leiden (2010)
  • J. Fuernkranz & A. Knobbe: T.R. - Data Mining and Knowledge Discovery Journal
  • J. Fürnkranz & A. Knobbe: Special Issue: Global Modeling Using Local Patterns, Data Mining and Knowledge Discovery journal 20(1). Heidelberg Berlin, Springer (2010)
  • S. Hakim, A. Knobbe, W. Duivesteijn & P.J.F.M. Lohuis: Results of a screening questionnaire measuring physical perception of patients undergoing esthetic rhinoplasty: a statistical analysis, Dutch Journal for Otorhinolaryngology 2: 100 (2010)
  • Eelke van der Horst, Julio E. Peironcely, A.P. IJzerman, M.W. Beukers, J.R. Lane, H.W.T. van Vlijmen, M.T.M. Emmerich, Yasushi Okuno & A. Bender: A novel chemogenomics analysis of G protein-coupled receptors (GPCRs) and their ligands: a potential strategy for receptor de-orphanization, BMC Bioinformatics 11: 316 (2010)
  • L. Ilie, G. Rozenberg, A. Salomaa & K. Salomaa (Eds.): Formal Languages and Applications, Theoretical Computer Science 410. Amsterdam, The Netherlands, Elsevier Science Publishers (2010)
  • M. Israel, J. van der Schaar, E.L. van den Broek, M. den Uyl & P.W.H. van der Putten: Multi-Level Visual Alphabets. In: Proceedings International Conference on Image Processing Theory, Tools and Applications (IPTA 2010) (2010)
  • J.W. Klinkenberg, M.T.M. Emmerich, A.H. Deutz, O.M. Shir & T.H.W. Bäck: A Reduced-Cost SMS-EMOA Using Kriging, Self-Adaptation, and Parallelization. In: Multiple Criteria Decision Making for Sustainable Energy and Transportation Systems, Lecture Notes in Computer Science 634, Springer-Verlag (2010)
  • A. Knobbe, H. Blockeel, A. Koopman, T. Calders, Bas Obladen, C. Bosma, H. Galenkamp, E. Koenders & J.N. Kok: InfraWatch: Data management of large systems for monitoring infrastructural performance. In: Intelligent Data Analysis (IDA), Lecture notes in Computer Science 6065: 91-102, Springer (2010)
  • A. Knobbe, A. Koopman, J.N. Kok, B. Obladen, C. Bosma & H. Galenkamp: The Role of Fielded Applications in Machine Learning Education. In: Proceedings of the BeneLearn 2010 (2010)
  • A. Koopman, A. Knobbe & M. Meeng: Pattern Selection Problems in Multivariate Time-Series using Equation Discovery. In: Proceedings of KDD'10 workshop - Useful Patterns (2010) (2010)
  • J.W. Kruisselbrink, M.T.M. Emmerich, A.H. Deutz & T.H.W. Bäck: A Robust Optimization Approach using Kriging Metamodels for Robustness Approximation in the CMA-ES. In: IEEE Congress on Evolutionary Computation (CEC 2010): 1-8, IEEE (2010)
  • J.W. Kruisselbrink, M.T.M. Emmerich & T.H.W. Bäck: An Archive Based Method for Applying Evolutionary Algorithms to Find Robust Optima, LIACS Technical Report 2010-01, Universiteit Leiden (2010)
  • A. v.d. Kuijl, M.T.M. Emmerich & Rui Li: A robust multi-objective resource allocation scheme incorporating uncertainty and service differentiation, Concurrency and Computation: Practice and Experience 22: 314-328 (2010)
  • M. Meeng, A. Knobbe, A. Koopman, J.B. Klinken & S.A.A. van den Berg: Equation Discovery for Whole-Body Metabolism Modelling. In: Proceedings Machine Learning in Systems Biology 2010 (MLSB 2010) (2010)
  • J. Meinhardt, A. Lipp, I. Heinle & T.H.W. Bäck: Identification and Validation of Material Descriptions.. In: Bauteile der Zukunft: Methoden und Prozesse: 431-445, Europäische Forschungsgesellschaft für Blechverarbeitung e.V. (2010)
  • A. Nezhinsky, J.W. Kruisselbrink & F.J. Verbeek: Convex Shape Retrieval from Edge Maps by the use of an Evolutionary Algorithm. In: J. Filipe H. Gamboa A. Fred (Ed.), Proceedings 1st International Conference on Bioinformatics, Valencia, Spain: 221-225 (2010)
  • G. Paun, M.J. Perez-Jimenez, A. Riscos-Nunez, G. Rozenberg & A. Salomaa (Eds.): Membrane Computing, Lecture Notes in Computer Science 5957. Heidelberg-Berlin, Springer (2010) doi:10.1007/978-3-642-18123-8
  • G. Paun & G. Rozenberg: An introduction to and an overview of membrane computing. In: G. Paun, G. Rozenberg & A. Salomaa (Eds.), The Oxford Handbook of Membrane Computing: 1-27, Oxford University Press (2010)
  • G. Paun & G. Rozenberg: Computability elements for membrane computing. In: G. Paun, G. Rozenberg & A. Salomaa (Eds.), The Oxford Handbook of Membrane Computing: 58-82, Oxford University Press (2010)
  • G. Paun & G. Rozenberg: Other Topics in Membrane Computing. In: G. Paun, G. Rozenberg & A. Salomaa (Eds.), The Oxford Handbook of Membrane Computing: 654-663. Oxford, UK, Oxford University Press (2010)
  • G. Paun, G. Rozenberg & A. Salomaa (Eds.): The Oxford Handbook of Membrane Computing. Oxford, UK, Oxford University Press (2010)
  • B. Pieters, A. Knobbe & S. Dzeroski: Subgroup Discovery in Ranked Data, with an Application to Gene Set Enrichment. In: Proceedings Preference Learning workshop (PL 2010) at ECML PKDD 2010 (2010)
  • W. Pijls & W.A. Kosters: Mining Frequent Itemsets: A Perspective from Operations Research, Statistica Neerlandica 64: 367-387 (2010)
  • P.W.H. van der Putten: Data Fusion for Direct Marketing. In: Joint Meeting GfKl - CLADAG 2010 (2010)
  • P.W.H. van der Putten: On data Mining in Context: Cases, Fusion and Evaluation. Leiden University (2010-01-19) promotor: prof.dr. J.N. Kok
  • P.W.H. van der Putten & J.N. Kok: Using Data Fusion to Enrich Customer Databases with Survey Data for Database Marketing. In: Casillas Jorge & Martinez Lopez Francisco Jose (Eds.), Marketing Intelligent Systems Using Soft Computing, Series Studies in Fuzziness and Soft Computing 258 (2010)
  • D. Radosavljevik, P.W.H. van der Putten & K. Kyllesbech Larsen: The Impact of Experimental Setup in Prepaid Churn Prediction for Mobile Telecommunications: What to Predict, from Whom and does the Customer Experience Matter?, Transactions on Machine Learning and Data Mining 3: 80-99 (2010)
  • D. Radosavljevik, P.W.H. van der Putten & K. Kyllesbech Larsen: The Impact of Experimental Setup on Prepaid Churn Modeling: Data, Population and Outcome Definition. In: Workshop on Data Mining in Marketing (DMM 2010) (2010)
  • H. Rahmani, H. Blockeel & A. Bender: Collaboration based function prediction in protein-protein interaction networks. In: Proceedings of the 7th International Symposium on Networks in Bioinformatics (2010)
  • H. Rahmani, H. Blockeel & A. Bender: Collaboration-based function prediction in protein-protein interaction networks. In: European Conference on Computational Biology (2010)
  • H. Rahmani, H. Blockeel & A. Bender: Collaboration-based function prediction in protein-protein interaction networks. In: Machine Learning in Systems Biology: Proceedings of the Fourth International Workshop: 55-58 (2010)
  • H. Rahmani, H. Blockeel & A. Bender: Predicting the functions of proteins in protein-protein interaction networks from global information. In: JMLR: Workshop and Conference Proceedings: International Workshop on Machine Learning in Systems Biology 8: 82-97 (2010)
  • H. Rahmani, B. Nobakht & H. Blockeel: Collaboration-based social tag prediction in the graph of annotated web pages DyNaK 2010: Dynamic Networks and Knowledge Discovery. In: DyNaK 2010: Dynamic Networks and Knowledge Discovery: 1-12 (2010)
  • S. Ray, S. Scott & H. Blockeel: Multi-instance learning. In: G. Webb C. Sammut (Ed.), Encyclopedia of Machine Learning, Springer (2010)
  • E. Reehuis & T.H.W. Bäck: Mixed-integer evolution strategy using multiobjective selection applied to warehouse design optimization. In: Proceedings Genetic and Evolutionary Computation Conference, GECCO 2010: 1187-1194 (2010)
  • M. Schraagen & G. Bloothooft: Evaluating Repetitions, or how to Improve your Multilingual ASR System by doing Nothing. In: Proceedings of the International Conference on Language Resources and Evaluation, LREC 2010 (2010)
  • O.M. Shir, M.T.M. Emmerich & T.H.W. Bäck: Adaptive niche radii and niche shapes approaches for niching with the cma-es, Evolutionary Computation 18: 97-126 (2010)
  • N. Taghipour, D. Fierens & H. Blockeel: Probabilistic logical learning for biclustering: A case study with surprising results, CW Reports CW597, K.U. Leuven (2010)
  • F.W. Takes & W.A. Kosters: Applying Monte Carlo Techniques to the Capacitated Vehicle Routing Problem. In: Proceedings 22nd Benelux Conference on Artificial Intelligence (BNAIC 2010) (2010)
  • A. Terroba, W.A. Kosters & J.K. Vis: Tactical Analysis Modeling through Data Mining: Pattern Discovery in Racket Sports. In: International Conference on Knowledge Discovery and Information Retrieval (KDIR 2010) (2010)
  • J.K. Vis, W.A. Kosters & A. Terroba: Tennis Patterns: Player, Match and Beyond. In: 22nd Benelux Conference on Artificial Intelligence (BNAIC 2010) (2010)
  • Jun Wang, H.J. Hoogeboom & L. Pan: Spiking Neural P Systems with Neuron Division. In: T. Hinze, G. Paun, M. Gheorghe, G. Rozenberg & A. Salomaa (Eds.), Membrane Computing, 11th International Conference (CMC 2010), Lecture Notes in Computer Science 6501: 361-376, Springer (2010) doi:10.1007/978-3-642-18123-8_28
  • Jun Wang, H.J. Hoogeboom, L. Pan, G. Paun & A.J. Pérez-Jiménez: Spiking Neural P Systems with Weights, Neural Computation 22: 2615-2646 (2010) doi:dx.doi.org/10.1162/NECO_a_00022
  • T. Van de Wiele, O.V. Tragante Do, R. Alves da Silva & H. Blockeel: Knowledge discovery in panoramic X-rays for postmortem identification. In: Proceedings of BNAIC. Benelux Conference on Artificial Intelligence: 1-6 (2010)

2009

  • S. Aliakbary, H. Abolhassani, H. Rahmani & B. Nobakht: Web Page Classification Using Social Tags. In: IEEE 2009 International Conference on Computational Science and Engineering: 588-593 (2009)
  • K.J. Batenburg, S. Henstra, W.A. Kosters & W.J. Palenstijn: Constructing Simple Nonograms of Varying Difficulty, Pure Mathematics and Applications (Pu.M.A.) 20: 1-15 (2009)
  • K.J. Batenburg & W.A. Kosters: Solving Nonograms by Combining Relaxations, Pattern Recognition 42: 1672-1683 (2009)
  • H. Blockeel & R. Brijder: Learning non-confluent NLC graph grammar rules. In: Mathematical Theory and Computational Practice, Fifth Conference on Computability in Europe, CiE 2009: 60-69, University of Heidelberg (2009)
  • R. Brijder & H.J. Hoogeboom: Perfectly Quilted Rectangular Snake Tilings, Theoretical Computer Science 410: 1486-1494 (2009) doi:10.1016/j.tcs.2008.12.010
  • R. Brijder & H.J. Hoogeboom: Reality-and-Desire in Ciliates. In: A. Condon, D. Harel, J.N. Kok, A. Salomaa & E. Winfree (Eds.), Algorithmic Bioprocesses, Natural Computing Series 99, Springer (2009)
  • R. Brijder, H.J. Hoogeboom & G. Rozenberg: Reduction Graphs from Overlap Graphs for Gene Assembly in Ciliates, International Journal of Foundations of Computer Science 20: 271-291 (2009) doi:10.1142/S0129054109006553
  • D.J. Broekens, W.A. Kosters & T. de Vries: Eye Movements Disclose Decisions in Set. In: Proceedings 21th Benelux Conference on Artificial Intelligence (BNAIC 2009): 43-50 (2009)
  • C. Calude, J.F. Costa, N. Dershowitz, E. Freire & G. Rozenberg (Eds.): Unconventional Computation, 8th International Conference, UC 2009, Lecture Notes in Computer Science 5715. Heidelberg, Springer (2009) doi:978-3-642-03745-0
  • J Chen, M.T.M. Emmerich, R. Li, J.N. Kok & T.H.W. Bäck: How to Do Recombination in Evolution Strategies: An Empirical Study. In: Third International Work conference on the Interplay between Natural and Artificial Computation, Lecture notes in Computer Science 5601: 223-232 (2009)
  • T.K. Cocx: Algorithmic Tools for Data-Oriented Law Enforcement. Leiden University (2009-12-02) promotor: prof.dr. J.N. Kok & dr. W.A. Kosters
  • F. Colas: Data Mining Scenarios for the Discovery of Subtypes and the Comparison of Algorithms. Leiden University (2009-03-04) promotor: prof.dr. J.N. Kok
  • F. Colas, Ingrid Meulenbelt, Jeanine J. Houwing-Duistermaat, Margreet Kloppenburg, Iain Watt, Stephanie M. Rooden, Martine Visser, Johan Marinus, Edward O. Cannon, Andreas Bender, Jacobus J. Hilten, P. Slagboom & J.N. Kok: A Scenario Implementation in R for SubtypeDiscovery Examplified on Chemoinformatics Data. In: Leveraging Applications of Formal Methods, Verification and Validation: 669-683 (2009)
  • D.W. Corne, P. Frisco, G. Paun, G. Rozenberg & A. Salomaa (Eds.): Membrane Computing - 9th International Workshop, WMC 2008, Lecture Notes in Computer Science 5391. Heidelberg, Springer (2009) doi:10.1007/978-3-540-95885-7
  • M.R. Doddareddy, G.J.P. van Westen, E. van der Horst, J. Peironcely, F. Corthals, A.P. IJzerman, M.T.M. Emmerich, J.L. Jenkins & A. Bender: Chemogenomics: Looking at biology through the lens of chemistry, Statistical Analysis and Data Mining 2: 149-160 (2009)
  • A. Ehrenfeucht & G. Rozenberg: Computational Nature of Processes Induced by Biochemical Reactions. In: Membrane Computing - 11th International Conference, CMC 2010, Lecture Notes in Computer Science 5957: 16-17. Heidelberg, Springer Verlag (2009) doi:10.1007/978-3-642-11467-0_2
  • A. Ehrenfeucht & G. Rozenberg: Introducing time in reaction systems, Theoretical Computer Science 410: 310-322 (2009) doi:10.1016/j.tcs.2008.09.043
  • J. Engelfriet: The time complexity of typechecking tree-walking tree transducers, Acta Informatica 46: 139-154 (2009)
  • J. Engelfriet, E. Lilin & A. Maletti: Extended multi bottom-up tree transducers -- Composition and decomposition, Acta Informatica 46: 561-590 (2009)
  • J. Engelfriet, S. Maneth & H. Seidl: Deciding equivalence of top-down XML transformations in polynomial time, Journal of Comp. Syst. Sci. 75: 271-286 (2009)
  • R Frank, M. Ester & A. Knobbe: A Multi-Relational Approach to Spatial Classification. In: Proceedings KDD 2009 (2009)
  • H.J. Hoogeboom: Automata walking over trees and graphs. In: H Bordihn, R Freund, M Holzer, M Kutrib & F Otto (Eds.), Workshop on Non-Classical Models for Automata and Applications (NCMA) Band 256: 11-14. Vienna, Austria, Oesterreichische Computer Gesellschaft (2009)
  • A. Knobbe & J. Fuernkranz: From Local Patterns to Global Models: Proceedings of the ECML PKDD 2009 Workshop. Heidelberg, Springer (2009)
  • A. Knobbe & J. Valkonet: Building Classifiers from Pattern Teams. In: From Local Patterns to Global Models: Proceedings of the ECML PKDD 2009 Workshop: 77-93 (2009)
  • J.W. Kruisselbrink, A. Aleman, M.T.M. Emmerich, A.P. IJzerman, A. Bender, T.H.W. Bäck & E. van der Horst: Enhancing search space diversity in multi-objective evolutionary drug molecule design using niching. In: Proceedings of the 11th Annual conference on Genetic and Evolutionary Computation (GECCO): 217-224. New York, ACM (2009)
  • J.W. Kruisselbrink, Michael Emmerich, T.H.W. Bäck, Andreas Bender, Ad P. IJzerman & Eelke van der Horst: Combining Aggregation with Pareto Optimization: A Case Study in Evolutionary Molecular Design. In: Evolutionary Multi-Criterion Optimization, Lecture Notes in Computer Science: 453-467, Springer Berlin / Heidelberg (2009)
  • J.W. Kruisselbrink, M.T.M. Emmerich, T.H.W. Bäck, A. Bender, A.P. IJzerman & E. van der Horst: Combining aggegration with pareto optimization: A case study in evolutionary molecular design. In: Evolutionary Multi-Criterion Optimization, 5th International Conference, EMO 2009, Lecture notes in Computer Science 5467: 453-467, Springer (2009)
  • J.W. Kruisselbrink, M.T.M. Emmerich & T.H.W. Bäck: On the limitations of adaptive resampling in using the student's t-test evolution strategies. In: Proceedings of the 11th Annual conference on Genetic and Evolutionary Computation (GECCO): 2649-2656. New York, ACM (2009)
  • J.F.J. Laros: Metrics and Visualisation for Crime Analysis and Genomics. Leiden University (2009-12-21) promotor: prof.dr. J.N. Kok & dr. W.A. Kosters
  • R. Li, M.T.M. Emmerich, J. Eggermont, E.G.P. Bovenkamp, T.H.W. Bäck, J Dijkstra & H. Reiber: Optimizing a medical image analysis system using mixed-integer evolution strategies. In: S. Cagnoni et al (Ed.), Evolutionary Image Analysis and Signal Processing, Studies in Computational Intelligence 213, Springer (2009)
  • R. Li, M.T.M. Emmerich, J. Eggermont, J Dijkstra & J.H.C. Reiber: Radial Basis Function Network Models for metamodeling and Optimization in Mixed-Integer Spaces
  • K. Van Loon, F. Guiza Grandas, G. Meyfroidt, J.-M. Aerts, J. Ramon, H. Blockeel, M. Bruynooghe, G. Van den Berghe & D. Berckmans: Dynamic Data Analysis and Data Mining for Prediction of Clinical Stability. In: Medical Informatics Europe, edition 22: 590-594 (2009)
  • W. Meert, J. Struyf & H. Blockeel: CP-logic theory inference with contextual variable elimination and comparison to BDD based inference methods. In: Proceedings of the 19th International Conference on Inductive Logic Programming (ILP) (2009)
  • E. De Paula Costa, C. Vens & H. Blockeel: Top-down phylogenetic tree reconstruction: a decision tree approach. In: International Workshop on Machine Learning in Systems Biology (2009)
  • H. Rahmani, H. Blockeel & A. Bender: Predicting the functions of proteins in PPI networks from global information. In: Proceedings of the Third International Workshop on Machine Learning in Systems Biology: 85-94, Helsinki University Printing House (2009)
  • O.M. Shir & T.H.W. Bäck: Niching with Derandomized Evolution Strategies in Artificial and Real-World Landscapes, Natural computing 8: 171-196 (2009)
  • O.M. Shir, M. Preuss, B. Naujoks & M.T.M. Emmerich: Enhancing decision space diversity in evolutionary multiobjective algorithms. In: Evolutionary Multi-Criterion Optimization, 5th International Conference, EMO 2009, Lecture notes in Computer Science 5467: 95-109, Springer (2009)
  • F.W. Takes & W.A. Kosters: Solving SameGame and its Chessboard Variant. In: Proceedings 21st Benelux Conference on Artificial Intelligence (BNAIC 2009): 249-256 (2009)
  • J. Vanschoren & H. Blockeel: Stand on the shoulders of giants. Towards a portal for collaborative experimentation in data mining. In: Proceedings of the SoKD-09 International Workshop on Third Generation Data Mining at ECML PKDD 2009 1: 88-99 (2009)
  • J. Verschoren & H. Blockeel: A community-based platform for machine learning experimentation. In: Machine Learning and Knowledge Discovery in Databases, European Conference ECML PKDD 2009, Lecture notes in Computer Science 5782: 750-754, Springer (2009)
  • Jun Wang, H.J. Hoogeboom, L. Pan & G. Paun: Spiking Neural P Systems with Weights and Thresholds. In: G Paun, M.J. Pérez-Jiménez & A. Riscos-Núñez (Eds.), Proceedings of the Tenth Workshop on Membrane Computing (WMC10): 514-533, University of Seville (2009)

2008

  • P.W.H. van der Putten, J.N. Kok & L.J. Meng: Profiling Novel Classification Algorithms: Artificial Immune Systems. In: Proceedings Seventh IEEE International Conference on Cybernetic Intelligent Systems 2008 (CIS 2008) (2011)
  • K.J. Batenburg & W.A. Kosters: A Reasoning Framework for Solving Nonograms. In: Combinatorial Image Analysis, Lecture Notes in Computer Science 4958: 372-383. Berlin/Heidelberg, Springer (2008)
  • K.J. Batenburg & W.A. Kosters: Automatic Generation of Japanese Puzzles. In: A. Nijholt, M. Pantic, M. Poel and H. Hondorp (Ed.), 20th Belgium-Netherlands Conference on Artificial Intelligence: 387-388 (2008)
  • H. Blockeel: Exposing the Causal Structure of Processes by Learning CP-Logic Programs. In: PRICAI 2008: 2 (2008)
  • H. Blockeel, T. Calders, E. Fromont, B. Goethals, A. Prado & C. Robardet: An Inductive Database Prototype Based on Virtual Mining Views. In: 14th ACM SIGKDD International Conference on Knowledge Discovery and Data Mining: 1061-1064 (2008)
  • H. Blockeel, T. Calders, E. Fromont, B. Goethals & A. Prado: Mining Views: Database Views for Data Mining. In: IEEE 24th International Conference on Data Engineering: 1608-1611 (2008)
  • H. Blockeel & S. Nijssen: Induction of node label controlled graph grammar rules. In: Kaski, S., Vishwanathan, S., Wrobel, S. (Ed.), 6th International Workshop on Mining and Learning with Graphs: 1-4 (2008)
  • H. Blockeel, J.W. Shavlik & P. Tadepalli: Guest editors' introduction: special issue on inductive logic programming, Machine Learning 73: 1-2 (2008)
  • H. Blockeel, J.W. Shavlik & P. Tadepalli: Guest editors’ introduction: Special issue on inductive logic programming, Machine Learning 73: 1-2 (2008)
  • R. Breukelaar & T. Bäumlick: Self-adaptive mutation rates in genetic algorithm for inverse design of cellular automata. In: GECCO 2008: 1101-1102 (2008)
  • R. Brijder, M. Cavaliere, A. Riscos-Núñez & G. Rozenberg: Membrane Systems with Proteins Embedded in Membranes, Theoretical Computer Science 404: 26-39 (2008) doi:10.1016/j.tcs.2008.04.002
  • R. Brijder & H.J. Hoogeboom: Extending the Overlap Graph for Gene Assembly in Ciliates. In: C. Martín-Vide, F. Otto & H. Fernau (Eds.), Language and Automata Theory and Applications, Lecture notes in Computer Science 5196: 137-148 (2008) doi:10.1007/978-3-540-88282-4_14
  • R. Brijder, H.J. Hoogeboom & M. Muskulus: Strategies of Loop Recombination in Ciliates, Discrete Applied Mathematics 156: 1736-1753 (2008) doi:10.1016/j.dam.2007.08.032
  • R. Brijder & H.J. Hoogeboom: The Fibers and Range of Reduction Graphs in Ciliates, Acta Informatica 45: 383-402 (2008) doi:10.1007/s00236-008-0074-3
  • D.J. Broekens, D. DeGroot & W.A. Kosters: Formal models of appraisal: Theory, specification, and computational model, Cognitive Systems Research 9: 173-197 (2008)
  • C. Calude, J.F. Costa, R. Freund, M. Oswald & G. Rozenberg (Eds.): Unconventional Computation. Heidelberg-Berlin, Springer (2008) doi:10.1007/978-3-642-03745-0
  • T.K. Cocx, W.A. Kosters & J.F.J. Laros: An Early Warning System for the Prediction of Criminal Careers. In: MICAI 2008: Advances in Artificial Intelligence, Lecture Notes in Computer Science 5317: 77-89. Berlin / Heidelberg, Springer (2008)
  • T.K. Cocx, W.A. Kosters & J.F.J. Laros: Temporal Extrapolation within a Static Clustering. In: Foundations of Intelligent Systems, Lecture Notes in Computer Science 4994: 189-195, Springer Berlin / Heidelberg (2008)
  • F. Colas, I. Meulenbelt, J.J. Houwing-Duistermaat, M. Kloppenburg, I. Watt, S.M. van Rooden, M. Visser, J. Marinus, E.O. Cannon, A. Bender, J.J. van Hilten, P. Eline Slagboom & J.N. Kok: A Scenario Implementation in Rfor SubtypeDiscoveryExamplified on Chemoinformatics Data. In: ISoLA 2008: 669-683 (2008)
  • P. Drouillon & H. Blockeel: Prediction of molecular substructures from mass spectrograms using constraint based clustering. In: Kaski, S., Vishwanathan, S., Wrobel, S. (Ed.), 6th International Workshop on Mining and Learning With Graphs: 1-4 (2008)
  • J. Eggermont, R. Li, E.G.P. Bovenkamp, H.A. Marquering, M.T.M. Emmerich, A. van der Lugt, T.H.W. Bäck, J. Dijkstra & J.H.C. Reiber: Optimizing Computed Tomographic Angiography Image Segmentation Using Fitness Based Partitioning. In: Applications of Evolutionary Computing, Lecture Notes in Computer Science 4974: 275-284. Heidelberg, Springer Berlin / Heidelberg (2008)
  • M.T.M. Emmerich, A.H. Deutz & J.W. Klinkenberg: The computation of the expected improvement in dominated hypervolume of Pareto front approximations, LIACS Technical Report TR-4-2008. Leiden, Universiteit Leiden (2008)
  • M.T.M. Emmerich, C. Hopfe, R. Marijt, J. Hensen & C. Struck: Evaluating Optimization Methodologies for Future Integration in Building Performance Tools. In: Ian Parmee (Ed.), ACDM 2008 (2008)
  • M.T.M. Emmerich, J.W. Kruisselbrink, E. van der Horst, A.P. IJzerman, A. Bender & T.H.W. Bäck: Combined Interactive and Automated Adaptive Search for Molecular Design. In: Proceedings of Adaptive Computing in Design and Manufacture 2008, IPCC (2008)
  • M.T.M. Emmerich, B.V.Y. Li, A. Bender, E. Faddiev, J.W. Kruisselbrink, A.H. Deutz, E. van der Horst, A.P. IJzerman & T.H.W. Bäck: Analysing Molecular Landscapes Using Random Walks and Information Theory. In: German Conference on Chemoinformatics: 73. Goslar (2008)
  • M.T.M. Emmerich, R. Li, A. Zhang, I. Flesch & P. Lucas: Mixed-Integer Bayesian Optimization Utilizing A-Priori Knowledge on Parameter Dependences. In: 20th Belgian-Netherlands Conference on Artificial Intelligence (BNAIC). Enschede (2008)
  • J. Engelfriet: The complexity of typechecking tree-walking tree transducers, LIACS Technical Report 2008-01 (2008)
  • J. Engelfriet, E. Lilin & A. Maletti: Extended Multi Bottom-Up Tree Transducers. In: M. Ito, M. Toyama (Ed.), Developments in Language Theory, Lecture notes in Computer Science 5257: 289-300, Springer Verlag (2008)
  • J. Engelfriet, E. Lilin & A. Maletti: Extended Multi Bottom-Up Tree Transducers. In: Developments in Language Theory, Lecture Notes in Computer Science 5257: 289-300. Berlin / Heidelberg, Springer (2008)
  • V. van der Goes, O.M. Shir & T.H.W. Bäck: Niche Radius Adaptation with Asymmetric Sharing. In: PPSN, Lecture notes in Computer Science 5199: 195-204. Dortmund, Springer (2008)
  • E.H. de Graaf, J.N. Kok & W.A. Kosters: Mining Balanced Patterns in Web Access Data. In: A. Gammerman (Ed.), IASTED International Conference on Artificial Intelligence and Applications: 595-147 (2008)
  • E.H. de Graaf & W.A. Kosters: Visualizing Co-occurrence of Self-Optimizing Fragment Groups. In: A. Nijholt, M. Pantic, M. Poel and H. Hondorp (Ed.), 20th Belgium-Netherlands Conference on Artificial Intelligence: 81-88 (2008)
  • T. Harju, I. Petre, V. Rogojin & G. Rozenberg: Patterns of simple gene assembly in ciliates, Discrete Applied Mathematics 156: 2581-2597 (2008) doi:10.1016/j.dam.2007.09.026
  • H.J. Hoogeboom, W.A. Kosters & J.F.J. Laros: Selection of DNA Markers, IEEE Transactions on Systems, Man, and Cybernetics 38: 26-32 (2008) doi:10.1109/TSMCC.2007.906060
  • L. Kari & G. Rozenberg: The many facets of natural computing, Communications of the ACM 51: 83 (2008) doi:10.1145/1400181.1400200
  • J. Kazius, K. Wurdinger, M. van Iterson, J.N. Kok, T.H.W. Bäck & A.P. IJzerman: GPCR NaVa database: Natural variants in human G protein-coupled receptors, Human Mutation 29: 39-44 (2008)
  • W. Klinkenberg, M.T.M. Emmerich, A.H. Deutz, O.M. Shir & T.H.W. Bäck: A Reduced-Cost SMS-EMOA using Kriging, Self-Adaptation, and Parallelization. In: M. Ehrgott et al (Ed.), Conference on Multicriteria Decision Making 2008 (2008)
  • J.W. Klinkenberg, M.T.M. Emmerich & A.H. Deutz: Expected improvement of the S-metric for finite Pareto front approximations. In: Conference on Multicriteria Decision Making 2008, M. Ehrgott et al. (2008)
  • H.-J. Kreowski, S. Kuske & G. Rozenberg: Graph Transformation Units - An Overview, Lecture Notes in Computer Science 5065: 55-75 (2008) doi:10.1007/978-3-540-68679-8_5
  • G.J. Kroes, Y. Zhou, A.R.O. Cavalcanti, F. Jönsson, B.P. Higgins, W.-J. Chang, S. Juranek, T.G. Doak, G. Rozenberg, H.J. Lipps & L.F. Landweber: The Pathway to Detangle a Scrambled Gene, PLoS.ONE. 3 (2008) doi:10.1371/journal.pone.0002330
  • J.W. Kruisselbrink, T.H.W. Bäck, A.P. IJzerman & E. van der Horst: Evolutionary Algorithms for Automated Drug Design Towards Target Molecule Properties. In: Proceedings of GECCO 2008. Atlanta, ACM Press (2008)
  • A. v.d. Kuijl, M.T.M. Emmerich & Rui Li: A novel multi-objective optimization scheme for grid resource allocation. In: MGC 2008: 7 (2008)
  • A. v.d. Kuijl, Rui Li & M.T.M. Emmerich: A novel multi-objective optimization scheme for grid ressource allocation. In: 6th International Workshop on Middleware for Grid Computing - MGC 2008 (2008)
  • R. Li, J. Eggermont, O.M. Shir, M.T.M. Emmerich, T.H.W. Bäck, J. Dijkstra & J.H.C. Reiber: Mixed-Integer Evolution Strategies with Dynamic Niching. In: Günter Rudolph, Thomas Jansen, Simon M. Lucas, Carlo Poloni, Nicola Beume (Ed.), PPSN, Lecture notes in Computer Science 5199: 246-255, Springer (2008)
  • R. Li, M.T.M. Emmerich, J. Eggermont, E.G.P. Bovenkamp, T.H.W. Bäck, J. Dijkstra & J.H.C. Reiber: Metamodel-Assisted Mixed Integer Evolution Strategies and their Application to Intravascular Ultrasound Image Analysis. In: Proceedings of IEEE CEC: 2764-2771. Hong Kong (2008)
  • W. Meert, J. Struyf & H. Blockeel: Learning Ground CP-Logic Theories by Leveraging Bayesian Network Learning Techniques, Fundam. Inform. 89: 131-160 (2008)
  • W. Meert, J. Struyf & H. Blockeel: Learning ground CP-logic theories by leveraging Bayesian network learning technique, Fundamenta Informaticae (2008)
  • W. Penczek & G. Rozenberg (Eds.): Half a Century of Inspirational Research - Honoring the Scientific Influence of Antoni Mazurkiewicz, Fundamenta Informaticae 80. Amsterdam, IOS Press (2008)
  • B. Piccart, J. Struyf & H. Blockeel: Empirical Asymmetric Selective Transfer in Multi-objective Decision Trees. In: Discovery Science, Lecture Notes in Computer Science 5255: 64-75. Berlin / Heidelberg, Springer (2008)
  • J. Ramon, T. Croonenborghs, D. Fierens, H. Blockeel & M. Bruynooghe: Generalized ordering-search for learning directed probabilistic logical models, Machine Learning 70: 169-188 (2008)
  • G. Rozenberg: Computer Science, Informatics, and Natural Computing - Personal Reflections. In: New Computational Paradigms - Changing Conceptions of What is Computable: 373-379, Springer Verlag (2008) doi:10.1007/978-0-387-68546-5_16
  • L. Schietgat, J. Ramon, M. Bruyooghe & H. Blockeel: An Efficiently Computable Graph-Based Metric for the Classification of Small Molecules. In: Discovery Science, Lecture Notes in Computer Science 5255: 197-209. Berlin / Heidelberg, Springer (2008)
  • L. Schietgat, K. Theys, J. Ramon, H. Blockeel & A. Vandamme: Distinguishing epidemiological dependent from treatment (resistance) dependent HIV mutations: problem statement. In: Proceedings of the 1st International Workshop on Statistical and Relational Learning in Bioinformatics 19 (2008)
  • O.M. Shir, V. Beltrani, T.H.W. Bäck, H. Rabitz & M.J.J. Vrakking: On the diversity of multiple optimal controls for quantum systems, Journal of Physics B : Atomic Molecular and Optical Physics 41 (2008)
  • O.M. Shir, T.H.W. Bäck, H. Rabitz & M.J.J. Vrakking: On the Evolution of Laser Pulses Under a Dynamic Quantum Control Environment. In: Proceedings of IEEE-CEC 2008. Hong Kong, IEEE Press (2008)
  • O.M. Shir, J. Roslund, T.H.W. Bäck & H. Rabitz: Performance Analysis of Derandomized Evolution Strategies in Quantum Control Experiments. In: Proceedings of GECCO 2008, Atlanta, Georgia, ACM Press (2008)
  • F.W. Takes: Sokoban: Reversed Solving. In: NSVKI Student Conference: 31-36 (2008)
  • D. Umanski, W.A. Kosters, F.J. Verbeek & N.O. Schiller: Integrating computer games in speech therapy for children who stutter. In: Proc. 1st Workshop Child, Computer and Interaction (2008)
  • W. Uwents & H. Blockeel: A Comparison between Neural Network Methods for Learning Aggregate Functions. In: Discovery Science, Lecture Notes in Computer Science 5255: 88-99. Berlin / Heidelberg, Springer (2008)
  • W. Uwents & H. Blockeel: Learning Aggregate Functions with Neural Networks Using a Cascade-Correlation Approach. In: Inductive Logic Programming, Lecture Notes in Computer Science 5194: 315-329. Berlin / Heidelberg, Springer (2008)
  • J. Vanschoren, H. Blockeel, B. Pfahringer & G. Holmes: Experiment databases: Creating a new platform for meta-learning research. In: Proceedings of the ICML/COLT/UAI: 10-15 (2008)
  • J. Vanschoren & H. Blockeel: Investigating classifier learning behavior with experiment databases. In: Preisach, C., Burkhardt, H., Schmidt-Thieme, L., Decker, R. (Ed.), Data Analysis, Machine Learning and Applications: 421-428. Berlin Heidelberg, Springer (2008)
  • J. Vanschoren, H. Blockeel, B. Pfahringer & G. Holmes: Organizing the World's Machine Learning Information. In: . ISoLA 2008: 693-708 (2008)
  • J. Vanschoren, H. Blockeel, B. Pfahringer & G. Holmes: Organizing the World’s Machine Learning Information. In: Leveraging Applications of Formal Methods, Verification and Validation, Communications in Computer and Information Science 17: 693-708. Berlin / Heidelberg, Springer (2008)
  • C. Vens, J. Struyf, L. Schietgat, S. Dzeroski & H. Blockeel: Decision trees for hierarchical multi-label classification, Machine Learning 73: 185-214 (2008)
  • M. Witsenburg & H. Blockeel: A method to extend existing document clustering procedures in order to include relational information. In: Kaski, S., Vishwanathan, V., Wrobel, S. (Ed.), 6th International Workshop on Mining and Learning With Graphs: 1-3 (2008)
  • R. Brijder, M. Cavaliere, A. Riscos-Núñez, G. Rozenberg & D. Sburlan: Communication Membrane Systems with Active Symports, Journal of Automata, Languages and Combinatorics 11: 241-261 (2006)
  • J. Kleijn, M. Koutny & G. Rozenberg: Process Semantics for Membrane Systems, Journal of Automata, Languages and Combinatorics 11: 321-340 (2006)

2007

  • S.G. Akl, C.S. Calude, M.J. Dinneen, G. Rozenberg & T. Wareham (Eds.): Unconventional Computation, 6th International Conference, UC 2007, Lecture Notes in Computer Science 4618. Heidelberg, Springer Verlag (2007) doi:10.1007/978-3-540-73554-0
  • F. Bernardini, R. Brijder, G. Rozenberg & C. Zandron: Multiset-Based Self-Assembly of Graphs, Fundamenta Informaticae 75: 49-75 (2007)
  • H. Blockeel, M. Witsenburg & J.N. Kok: Hypergraphs, and Inductive Logic Programming. In: Paolo Frasconi, Kristian Kersting, Koji Tsuda (Ed.), Mining and Learning with Graphs: 93-96 (2007)
  • R. Brijder, M. Cavaliere, A. Riscos-Núñez, G. Rozenberg & D. Sburlan: Membrane Systems with Marked Membranes. In: Workshop on Membrane Computing and Biologically Inspired Process Calculi (MeCBIC 2006), Electronic Notes in Theoretical Computer Science (ENTCS) 171: 25-36 (2007) doi:10.1016/j.entcs.2007.05.005
  • R. Brijder & H.J. Hoogeboom: Characterizing Reduction Graphs for Gene Assembly in Ciliates. In: T. Harju, J. Karhumäki & A. Lepistö (Eds.), 11th International Conference on Developments in Language Theory, DLT 2007, Lecture Notes in Computer Science 4588: 120-131 (2007) doi:10.1007/978-3-540-73208-2_14
  • R. Brijder, H.J. Hoogeboom & G. Rozenberg: From Micro to Macro: How the Overlap Graph Determines the Reduction Graph in Ciliates. In: E. Csuhaj-Varjú & Z. Ésik (Eds.), Fundamentals of Computation Theory, 16th International Symposium, FCT 2007, Lecture Notes in Computer Science 4639: 149-160 (2007) doi:10.1007/978-3-540-74240-1_14
  • R. Brijder & H.J. Hoogeboom: Perfectly Quilted Rectangular Snake Tilings. In: J. Kari (Ed.), Proceedings of the Workshop on Tilings and Self-Assembly 45. Turku (2007)
  • R. Brijder & H.J. Hoogeboom: Perfectly Quilted Rectangular Snake Tilings. In: J. Kari (Ed.), Proceedings of the Workshop on Tilings and Self-Assembly 45, TUCS General Publication (2007)
  • R. Brijder & H.J. Hoogeboom: Using Sorting by Reversal: Breakpoint Graph for Gene Assembly in Ciliates. In: A.P.J.M. Siebes, M.R. Berthold, R.C. Glen & A.J. Feelders (Eds.), CompLife 2007: The Third International Symposium on Computational Life Sciences 940: 50-59 (2007) doi:10.1063/1.2793404
  • R. Brijder, M. Langille & I. Petre: A String-Based Model for Simple Gene Assembly. In: E. Csuhaj-Varjú, Z. Ésik (Ed.), Proceedings FCT 2007 Fundamentals of Computation Theory, 16th International Symposium, FCT 2007, Lecture notes in Computer Science 4639: 161-172 (2007)
  • D.J. Broekens: Affect and Learning: A Computational Analysis. Leiden University (2007-12-18) promotor: prof.dr. J.N. Kok
  • D.J. Broekens: Emotion and Reinforcement: Affective Facial Expressions Facilitate Robot Learning. In: LNAI Spec. Vol. on AI for Human Computing 4451: 113-132, Springer (2007)
  • D.J. Broekens & P. Haazebroek: Emotion and Reinforcement: Affective Facial Expressions Facilitate Robot Learning. In: IJCAI Workshop on AI for Human Computing (AI4HC'07: 47-54 (2007)
  • D.J. Broekens, W.A. Kosters & F.J. Verbeek: Affect, Anticipation, and Adaptation: Affect-Controlled Selection of Anticipatory Simulation in Artificial Adaptive Agents, Adaptive Behavior 15: 397-422 (2007)
  • D.J. Broekens, W.A. Kosters & F.J. Verbeek: On Affect and Self-Adaptation: Potential Benefits of Valence-Controlled Action-Selection. In: 2nd. International Work-Conference on the Interplay between Natural and Artificial Computation (IWINAC), Lecture notes in Computer Science 4527: 357-366, Springer (2007)
  • D.J. Broekens, W.A. Kosters & F.J. Verbeek: On Affect, Anticipation and Adaptation: Investigating the Potential of Affect-Controlled Selection of Anticipatory Simulation in Artificial Adaptive Agents, Adaptive Behavior 15: 397-422 (2007)
  • T.H.W. Bäck & B. Löwe: Computing and the natural sciences at CiE 2005, Theoretical Computer Science 371: 1-3 (2007)
  • T.K. Cocx & W.A. Kosters: Adapting and Visualizing Association Rule Mining Systems for Law Enforcement Purposes. In: M.M. Dastani and E. de Jong (Ed.), 19th Belgium-Netherlands Conference on Artificial Intelligence (BNAIC 2007): 88-95 (2007)
  • F. Colas, I. Meubelenbelt, J. Houwing, E. Slagboom & J.N. Kok: Disease subtypes recognition with particular application to Osteo Arthritis classification. In: 2nd Netherlands BioInformatic Conference 2007 (NBIC-ISNB 2007) (2007)
  • F. Colas, I. Meulenbelt, J.J. Houwing-Duistermaat, J.N. Kok & P.E. Slagboom: A comparison of two methods for finding groups using heat maps and model based clustering. In: 27th Annual International Conference of the British computer Society's Special Group on Artificial Intelligence (SGA1): A1. Cambridge (2007)
  • F. Colas, P. Paclík, J.N. Kok & P. Brazdil: Does SVM Really Scale Up to Large Bag of Words Feature Spaces?. In: M.R. Berthold, J. Shawe-Taylor, N. Lavrac (Ed.), Advances in Intelligent Data Analysis VII, 7th International Symposium on Intelligent Data Analysis, Lecture notes in Computer Science 4723: 296-307, Springer (2007)
  • A.H. Deutz, R. van Vliet & H.J. Hoogeboom: High Spies, or How to win a programming contest. In: P. Crescenzi, G. Prencipe & G. Pucci (Eds.), Fun with Algorithms, FUN 2007, Lecture Notes in Computer Science 4475: 93-107 (2007) doi:10.1007/978-3-540-72914-3_10
  • A. Ehrenfeucht, T. Harju & G. Rozenberg: Finite metrics in switching classes, Discrete Applied Mathematics 155: 68-73 (2007) doi:10.1016/j.dam.2006.04.041
  • A. Ehrenfeucht, D.M. Prescott & G. Rozenberg: A model for the origin of internal eliminated segments (IESs) and gene rearrangement in stichotrichous ciliates, Journal of Theoretical Biology 244: 108-114 (2007) doi:10.1016/j.jtbi.2006.06.032
  • A. Ehrenfeucht & G. Rozenberg: Biochemical Reactions as Computations. In: S.B. Cooper, B. Löwe & A. Sorbi (Eds.), Computation and Logic in the Real World, Third Conference on Computability in Europe, CiE 2007, Lecture Notes in Computer Science 4497: 672-673, Pringer Verlag (2007) doi:10.1007/978-3-540-73001-9_70
  • A. Ehrenfeucht & G. Rozenberg: Events and modules in reaction systems, Theoretical Computer Science 376: 3-16 (2007) doi:10.1016/j.tcs.2007.01.008
  • A. Ehrenfeucht & G. Rozenberg: Reaction Systems, Fundamenta Informaticae 75: 263-280 (2007)
  • M.T.M. Emmerich, A.H. Deutz & N. Beume: Gradient-Based/Evolutionary Relay Hybrid for Computing Pareto Front Approximations Maximizing the S-Metric, Hybrid Metaheuristics : 140-156 (2007)
  • M.T.M. Emmerich & A.H. Deutz: Test Problems based on Lame Superspheres. In: Evolutionary Multiobjective Optimization 2007 (EMO2007), Lecture notes in Computer Science 4403: 922-936, Springer (2007)
  • J. Engelfriet: A Kleene characterization of computability, Information Processing Letters 101: 139-140 (2007)
  • J. Engelfriet & Tj. Gelsema: An exercise in structural congruence, Information Processing Letters 101: 1-5 (2007)
  • J. Engelfriet & H.J. Hoogeboom: Automata with nested pebbles capture first-order logic with transitive closure, Logical Methods in Computer Science 3: 1-27 (2007) doi:10.2168/LMCS-3(2:3)2007
  • J. Engelfriet & H.J. Hoogeboom: Finitary Compositions of Two-way Finite-State Transductions, Fundamenta Informaticae 80: 111-113 (2007)
  • J. Engelfriet, H.J. Hoogeboom & H. Samwel: XML Transformation by Tree-Walking Transducers with Invisible Pebbles. In: L. Libkin (Ed.), Proceedings of the twenty-sixth ACM Symposium on Principles of Database Systems, PODS 2007: 63-72, ACM Press (2007) doi:10.1145/1265530.1265540
  • Y. Gao & H.J. Hoogeboom: P Systems with Single Passenger, International Journal of Foundations of Computer Science 17: 1227-1235 (2007) doi:10.1142/S0129054107005273
  • E.H. de Graaf, J. Kazius, J.N. Kok & W.A. Kosters: Visualization and Grouping of Graph Patterns in Molecular Databases. In: Bramer, M., Coenen, F., Petridis, M. (Ed.), Research and Development in Intelligent Systems XXIV: 267-280, Springer (2007)
  • E.H. de Graaf, J.N. Kok & W.A. Kosters: Clustering Improves the Exploration of Graph Mining Results. In: Boukis, C., Pnevmatikakis, A., Polymenakos, L. (Ed.), Artificial Intelligence and Innovations 2007: from Theory to Applications, Proceedings of the 4th IFIP International Conference on Artificial Intelligence, Applications and Innovations (AIAI07): 13-20, Springer (2007)
  • E.H. de Graaf, J.N. Kok & W.A. Kosters: Displaying Co-occurrences of Patterns in Streams for Website Usage Analysis. In: Dastani, M.M., Jong, E. de (Ed.), 19th Belgium-Netherlands Conference on Artificial Intelligence (BNAIC 2007): 143-150 (2007)
  • T. Harju, C. Li, I. Petre & G. Rozenberg: Complexity measures for gene assembly. In: Knowledge Discovery and Emergent Complexity in Bioinformatics, Lecture Notes in Computer Science 4366: 42-60, Springer Verlag (2007) doi:10.1007/978-3-540-71037-0_4
  • C.V. Henkel, T.H.W. Bäck, J.N. Kok, G. Rozenberg & H.P. Spaink: DNA computing of solutions to knapsack problems, Biosystems 88: 156-162 (2007) doi:10.1016/j.biosystems.2006.06.001
  • E. Hogewoning, D.J. Broekens, J. Eggermont & E.G.P. Bovenkamp: Strategies for Affect-Controlled Action-Selection in Soar-RL. In: 2nd International Work-Conference on the Interplay between Natural and Artificial Computation (IWINAC), Lecture notes in Computer Science 4528: 501-510, Springer (2007)
  • J.N. Kok, J. Koronacki, R. López de Mántaras, S. Matwin, D. Mladenic & A. Skowron: Knowledge Discovery in Databases: PKDD 2007. In: 11th European Conference on Principles and Practice of Knowledge Discovery in Databases, Springer (2007)
  • J.N. Kok, J. Koronacki, R. López de Mántaras, S. Matwin, D. Mladenic & A. Skowron: Machine Learning: ECML 2007. In: 18th European Conference on Machine Learning, Springer (2007)
  • J.F.J. Laros & W.A. Kosters: Metrics for Mining Multisets. In: Bramer, M., Coenen, F., Petridis, M. (Ed.), Research and Development in Intelligent Systems XXIV, Proceedings of AI-2007, the Twenty-seventh SGAI International Conference on Innovative Techniques and Applications of Artificial Intelligence: 293-303, Springer (2007)
  • J.F.J. Laros & W.A. Kosters: Visualization on a Closed Surface. In: Dastani, M.M., Jong, E. de (Ed.), 19th Belgium-Netherlands Conference on Artificial Intelligence (BNAIC 2007): 189-195 (2007)
  • R. Li, J. Eggermont, M.T.M. Emmerich, E.G.P. Bovenkamp, T.H.W. Bäck, J. Dijkstra & J.H.C. Reiber: Towards Dynamic Fitness Based Partitioning for IntraVascular UltraSound Image Analysis. In: EvoWorkshops 2007: 391-398 (2007)
  • M. Muskulus, D. Besozzi, R. Brijder, P. Cazzaniga, S. Houweling, D. Pescini, G. Rozenberg & J. van der Greef: Cycles and Communicating Classes in Membrane Systems and Molecular Dynamics, Theoretical Computer Science 372: 242-266 (2007) doi:10.1016/j.tcs.2006.11.027
  • P. Paauwe, P.W.H. van der Putten & M.C. van Wezel: DMTC: An Actionable e-Customer Lifetime Value Model Based on Markov Chains and Decision Trees. In: Proceedings of the Ninth International Conference on Electronic Commerce: The Wireless World of Electronic Commerce 2007, ACM International Conference Proceedings Series 258 (2007)
  • G. Paun, M.J. Pérez-Jiménez & G. Rozenberg: Computing morphisms by spiking neural P systems, International Journal of Foundations of Computer Science 18: 1371-1382 (2007) doi:10.1142/S0129054107005418
  • E. Samsonova, P. Krause, T.H.W. Bäck & A.P. IJzerman: Characteristic amino acid combinations in olfactory G protein-coupled receptors, Proteins, Structure, Function and Bioinformatics 67: 154-166 (2007)
  • O.M. Shir & T.H.W. Bäck: Performance analysis of niching algorithms based on derandomized-ES variants. In: Lipson, H. (Ed.), Genetic and Evolutionary Computation Conference, GECCO 2007: 705-712. London, ACM (2007)
  • O.M. Shir & T.H.W. Bäck: The second harmonic generation case-study as a gateway for es to quantum control problems. In: Lipson, H. (Ed.), Genetic and Evolutionary Computation Conference, GECCO 2007: 713-721. London, ACM (2007)
  • O.M. Shir, M.T.M. Emmerich & T.H.W. Bäck: Self-Adaptive Niching CMA-ES with Mahalanobis Metric. In: proceedings of IEEE Congress on Evolutionary Computation, Research Publishing Services (2007)
  • O.M. Shir, M.T.M. Emmerich, T.H.W. Bäck & M.J.J. Vrakking: The Application of Evolutionary Multi-Criteria Optimization to Dynamic Molecular Alignment. In: proceedings of IEEE Congress on Evolutionary Computation, Research Publishing Services (2007)
  • O.M. Shir, J.N. Kok, T.H.W. Bäck & M.J.J. Vrakking: Gaining Insights into Laser Pulse Shaping by Evolution Strategies. In: Mira, J., Alvarez, J.R. (Ed.), Bio-inspired Modeling of Cognitive Tasks, Second International Work-Conference on the Interplay Between Natural and Artificial Computation, Lecture notes in Computer Science 4527: 467-477, Springer (2007)
  • O.M. Shir, V. Raz, R.W. Dirks & T.H.W. Bäck: Classification of Cell Fates with Support Vector Machine Learning. In: Marchiori, E., Moore, J.H., Rajapakse, J.C. (Ed.), Evolutionary Computation,Machine Learning and Data Mining in Bioinformatics, 5th European Conference, Lecture notes in Computer Science 4447: 258-269, Springer (2007)
  • M. Urselmann, M.T.M. Emmerich, J. Till, G. Sand & S. Engell: Design of problem-specific evolutionary algorithm/mixed-integer programming hybrids: two-stage stochastic integer programming applied to chemical batch scheduling, Engineering Optimization 39: 529-549 (2007)
  • K. Ye, W.A. Kosters & A.P. IJzerman: An efficient, versatile and scalable pattern growth approach to mine frequent patterns in unaligned protein sequences, Bioinformatics 23: 687-693 (2007)
  • K. Ye, W.A. Kosters & A.P. IJzerman: Versatile and Scalable Pattern Growth Approach to Mine Frequent Patterns in Unaligned Protein Sequences, Bioinformatics 23: 687-693 (2007)

2006

  • P. Baldan, H. Ehrig, J. Padberg & G. Rozenberg: Workshop on Petri Nets and Graph Transformations. In: A. Corradini, H. Ehrig, U. Montanari, L. Ribeiro & G. Rozenberg (Eds.), Graph Transformations, 3rd International Conference, ICGT 2006, Lecture notes in Computer Science 4178: 467-469, Springer (2006) doi:10.1007/11841883_35
  • K.J. Batenburg & W.A. Kosters: A neural network approach to real-time discrete tomography, Lecture notes in Computer Science 4040: 389-403 (2006)
  • D. Besozzi & G. Rozenberg: Formalizing Spherical Membrane Structures and Membrane Proteins Populations, Lecture notes in Computer Science 4361: 18-41 (2006) doi:10.1007/11963516_2
  • A. Brandstädt, J. Engelfriet, H.-O. Le & V.V. Lozin: Clique-width for 4-vertex forbidden subgraphs, Theory of Computing Systems 39: 561-590 (2006)
  • R. Breukelaar, M.T.M. Emmerich & T.H.W. Bäck: On interactive evolution strategies. In: Applications of Evolutionary Computing, Lecture Notes in Computer Science 3907: 530-541. Berlin / Heidelberg, Springer (2006)
  • R. Brijder, M. Cavaliere, A. Riscos-Nunez, G. Rozenberg & D. Sburlan: Membrane systems with external control. In: H.J. Hoogeboom, G. Paun, G. Rozenberg & A. Salomaa (Eds.), Membrane Computing, Lecture Notes in Computer Science 4361: 219-237, Springer Verlag (2006) doi:10.1007/11963516_14
  • R. Brijder, H.J. Hoogeboom & M. Muskulus: Applicability of Loop Recombination in Ciliates using the Breakpoint Graph. In: M.R. Berthold et al (Ed.), CompLife 2006, Lecture Notes in Bioinformatics 4216: 97-106, Springer Verlag (2006) doi:10.1007/11875741_10
  • R. Brijder, H.J. Hoogeboom & G. Rozenberg: Reducibility of Gene Patterns in Ciliates using the Breakpoint Graph, Theoretical Computer Science 356: 26-45 (2006) doi:10.1016/j.tcs.2006.01.041
  • R. Brijder, H.J. Hoogeboom & M. Muskulus: Strategies of Loop Recombination in Ciliates, LIACS Technical Report 2006-01 (2006)
  • D.J. Broekens, T.K. Cocx & W.A. Kosters: Object-Centered Interactive Multi-Dimensional Scaling: Ask the Expert. In: P.-Y. Schobbens, W. Vanhoof and G. Schwanen (Ed.), BNAIC 2006 (2006)
  • J.S. de Bruin, T.K. Cocx, W.A. Kosters, J.F.J.. Laros & J.N. Kok: Data Mining Approaches to Criminal Career Analysis. In: C.W. Clifton, N. Zhong, J. Liu, B.W. Wah and X. Wu (Ed.), Sixth IEEE International Conference on Data Mining: 171-177 (2006)
  • J.S. de Bruin, T.K. Cocx, W.A. Kosters, J.F.J. Laros & J.N. Kok: Onto Clustering of Criminal Careers. In: M. Ackermann, C. Soares and B. Guidemann (Ed.), Practical Data Mining: Applications, Experiences and Challenges: 90-93 (2006)
  • C.S. Calude, M.J. Dinneen, G. Paun, G. Rozenberg & S. Stepney (Eds.): Unconventional Computation, 5th International Conference, UC 2006, York, UK, Lecture Notes in Computer Science 4135. Heidelberg, Springer Verlag (2006)
  • M. Cavaliere, P. Frisco & H.J. Hoogeboom: Computing by Only Observing. In: Z. Dang & O.H. Ibarra (Eds.), Developments in Language Theory: 10th International Conference, DLT 2006, Lecture Notes in Computer Science 4036: 304-314, Springer Verlag (2006) doi:10.1007/11779148_28
  • J Chen, N. Jonoska & G. Rozenberg (Eds.): Nanotechnology: Science and Computation, Natural Computing Series. Heidelberg, Springer Verlag (2006) doi:10.1007/3-540-30296-4
  • T.K. Cocx & W.A. Kosters: A Distance Measure for Determining Similarity between Criminal Investigations. In: P. Perner (Ed.), Data Mining, Lecture Notes in Artificial Intelligence 4065: 511-525 (2006)
  • F. Colas & P. Brazdil: Comparison of SVM and some Older Classification Algorithms in Text Classification Tasks. In: Artificial Intelligence in Theory and Practice: 217, Springer (2006)
  • F. Colas & P. Brazdil: On the Behavior of SVM and some Older Algorithms in Binary Text Classification Tasks. In: 9th International Conference on Text Speech and Dialog (TSD 2006), Lecture notes in Computer Science 4188, Springer (2006)
  • A. Corradini, H. Ehrig, U. Montanari, L. Ribeiro & G. Rozenberg (Eds.): Graph Transformations, 3rd International Conference, ICGT 2006, Natal, Rio Grande do Norte, Brazil, Lecture Notes in Computer Science 4178. Heidelberg, Springer Verlag (2006)
  • M. Domaratzki, G. Rozenberg & K. Salomaa: Interpreted trajectories, Fundamenta Informaticae 73: 81-97 (2006)
  • J. Eggermont, E.G.P. Bovenkamp, R. Li, M.T.M. Emmerich, T.H.W. Bäck, J. Dijkstra & J.H.C. Reiber: Extending nk landscapes to the mixed-integer domain. In: 18th Belgium-Netherlands Conference on Artificial Intelligence (2006)
  • A. Ehrenfeucht, J. Hage, T. Harju & G. Rozenberg: The embedding problem for switching classes of graphs, Fundamenta Informaticae 74: 115-134 (2006)
  • A. Ehrenfeucht, T. Harju & G. Rozenberg: Embedding linear orders in grids, Acta Informatica 42: 419-428 (2006) doi:10.1007/s00236-005-0001-9
  • A. Ehrenfeucht & G. Rozenberg: Computational Nature of Biochemical Reactions. In: O.H. Ibarra & Z. Dang (Eds.), Developments in Language Theory, 10th International Conference, DLT 2006, Lecture notes in Computer Science 4036: 36 (2006)
  • A. Ehrenfeucht & G. Rozenberg: Covers from Templates, International Journal of Foundations of Computer Science 17: 475-488 (2006) doi:10.1142/S0129054106003930
  • M.T.M. Emmerich: Sms-emoa: Multiobjective selection based on dominated hypervolume, European Journal of Operational Research (2006)
  • M.T.M. Emmerich & A.H. Deutz: A family of test problems with pareto-fronts of variable curvature based on super-spheres. In: MCDM 2006 (2006)
  • M.T.M. Emmerich, J. Hundemer, M.C. Varcol, B. Naujoks & M. Abdel-Maksoud: Design optimization of ship propellers by means of advanced metamodel-assisted evolution strategies. In: International Conference on Design Optimization (2006)
  • M.T.M. Emmerich, R. Li, J. Eggermont, E.G.P. Bovenkamp, T.H.W. Bäck, J. Dijkstra & J.H.C. Reiber: Optimizing Parameters of Coronary Vessel Image Analysis using Evolution Strategies. In: 18th Belgium-Netherlands Conference on Artificial Intelligence (2006)
  • M.T.M. Emmerich, O.M. Shir & T.H.W. Bäck: Multi-criteria optimization in laser pulse shaping using evolutionary algorithms and kriging metamodels. In: MCDM 2006 (2006)
  • M.T.M. Emmerich, M. Urselmann, J. Till, G. Sand & S. Engell: Hybrid ea/mip method for solving two-stage stochastic programming problems in chemical batch scheduling. In: 7th International Conference on Adaptive Computing in Design and Manufacture, Lecture notes in Computer Science 3907 (2006)
  • J. Engelfriet & H.J. Hoogeboom: Nested Pebbles and Transitive Closure. In: B. Durand & W. Thomas (Eds.), STACS 2006, 23rd Annual Symposium on Theoretical Aspects of Computer Science, Lecture Notes in Computer Science 3884: 477-488, Springer Verlag (2006) doi:10.1007/11672142_39
  • J. Engelfriet & S. Maneth: The equivalence problem for deterministic MSO tree transducers is decidable, Information Processing Letters 100: 206-212 (2006)
  • R. Freund, G. Paun & G. Rozenberg: Contextual array grammars. In: K.G. Subramanian, K. Rangarajan & M. Mukund (Eds.), Formal Models, Languages and Applications: 112-136. Singapore, World Scientific (2006)
  • E.H. de Graaf, J.M. de Graaf & W.A. Kosters: Using Consecutive Support for Genomic Profiling. In: M. Hilarion and C. Nédellec (Ed.), Data and Text Mining for Integrative Biology: 16-27 (2006)
  • E.H. de Graaf & W.A. Kosters: Mining for Stable Patterns: Regular Intervals between Occurrences. In: P.-Y. Schobbens, W. Vanhoof and G. Schwanen (Ed.), BNAIC 2006: 149-155 (2006)
  • T. Harju, C. Li, I. Petre & G. Rozenberg: Parallelism in gene assembly, Natural computing 5: 151-163 (2006) doi:10.1007/s11047-005-4462-0
  • T. Harju, I. Petre & G. Rozenberg: Modelling simple operations for gene assembly. In: J. Chen, N. Jonoska & G. Rozenberg (Eds.), Nanotechnology: Science and Computation, Natural Computing Series: 361-376, Springer-Verlag (2006) doi:10.1007/3-540-30296-4_23
  • T. Harju, I. Petre, V. Rogojin & G. Rozenberg: Simple operations for gene assembly. In: A. Carbone & N.A. Pierce (Eds.), DNA Computing, Lecture notes in Computer Science 3892: 96-111 (2006) doi:10.1007/11753681_8
  • C.V. Henkel, G. Rozenberg & H.P. Spaink: Application of mismatch detection methods in DNA computing, Natural computing 5: 203-223 (2006) doi:10.1007/s11047-005-4463-z
  • H.J. Hoogeboom, G. Paun, G. Rozenberg & A. Salomaa (Eds.): Membrane Computing, Seventh International Workshop, WMC7. Heidelberg-Berlin, Springer (2006) doi:10.1007/11963516
  • J. Jakumeit, M.T.M. Emmerich & F. Hediger: Inverse modeling and numerical optimization of heater temperatures in a bridgman process. In: Modeling of Casting, Welding and Advanced Solidification Processes XI (2006)
  • J. Kazius, S. Nijssen, J.N. Kok, T.H.W. Bäck & A.P. IJzerman: Substructure mining using elaborate chemical representation, Journal of Chemical Information and Modeling 46: 597-605 (2006)
  • E.M.W. Lameijer, J.N. Kok, T.H.W. Bäck & A.P. IJzerman: Mining a Chemical Database for Fragment Co-occurrence: Discovery of "Chemical Clichés", Journal of Chemical Information and Modeling 46: 553-562 (2006)
  • E.M.W. Lameijer, J.N. Kok, T.H.W. Bäck & A.P. IJzerman: Mining a chemical database for fragment co-occurrence: discovery of "chemical clichs", Journal of Chemical Information and Modeling 46: 597-605 (2006)
  • E.M.W. Lameijer, J.N. Kok, T.H.W. Bäck & A.P. IJzerman: The Molecule Evoluator. An interactive evolutionary algorithm for the design of drug-like molecules, Journal of Chemical Information and Modeling 46: 545-552 (2006)
  • Rui Li, M.T.M. Emmerich, E.G.P. Bovenkamp, J. Eggermont, T.H.W. Bäck, J. Dijkstra & J.H.C. Reiber: Mixed-Integer Evolution Strategies and Their Application to Intravascular Ultrasound Image Analysis. In: F. Rothlauf et al (Ed.), 8th European Workshop on Evolutionary Computation in Image Analysis and Signal Processing (EvoIASP), Lecture notes in Computer Science 3907: 415-426, Springer Verlag (2006)
  • Rui Li, M.T.M. Emmerich, J. Eggermont, E.G.P. Bovenkamp, T.H.W. Bäck, J. Dijkstra & J.H.C. Reiber: Mixed-Integer NK Landscapes. Parallel Problem Solving from Nature. In: PPSN: 42-51 (2006)
  • R. Li, M.T.M. Emmerich, J. Eggermont, E.G.P. Bovenkamp, T.H.W. Bäck, J. Dijkstra & J.H.C. Reiber: Mixed-Integer Optimization of Coronary Vessel Image Analysis using Evolution Strategies. In: In M. Keijzer et al (Ed.), 8th annual conference on Genetic and evolutionary computation: 1645-1652 (2006)
  • R. Li, M.T.M. Emmerich, T.H.W. Bäck, E.G.P. Bovenkamp, J. Eggermont, J. Dijkstra & J.H.C. Reiber: Optimizing Parameters of Intravascular Ultrasound Image Analysis Systems using Mixed-Integer Evolution Strategies. In: Adaptive Computing in Design and Manufacture (ACDM), Lecture notes in Computer Science 3907: 283-284, IP-CC Press (2006)
  • M. Muskulus & R. Brijder: Complexity of bio-computation: symbolic dynamics in membrane systems, International Journal of Foundations of Computer Science 17: 147-165 (2006)
  • M. Muskulus, S. Houweling, G. Rozenberg, D. Besozzi, P. Cazzaniga, D. Pescini & R. Brijder: Reaction Cycles in Membrane Systems and Molecular Dynamics. In: C. Graciani-Diaz, G. Paun, A. Romero-Jimenez & F. Sancho-Caparrini (Eds.), Proceedings of the Fourth Brainstorming Week on Membrane Computing, Volume II, Research Group on Natural Computing, Sevilla University (2006)
  • G. Paun, M.J. Pérez-Jiménez & G. Rozenberg: Spike Trains in Spiking Neural P Systems, International Journal of Foundations of Computer Science 17: 975-1002 (2006) doi:10.1142/S0129054106004212
  • G. Rozenberg: Theory Inspired by Gene Assembly in Ciliates. In: O.H. Ibarra & H.-C. Yen (Eds.), Implementation and Application of Automata 11th International Conference, CIAA 2006, Lecture notes in Computer Science 4094: 10. Heidelberg, Springer Verlag (2006) doi:10.1007/11812128_2
  • O.M. Shir, C.H. Siedschlag, T.H.W. Bäck & M.J.J. Vrakking: Niching in evolution strategies and its application to laser pulse shaping. In: The 7th International Conference on Artificial Evolution (EA'05), Lecture notes in Computer Science 3871, Springer Verlag (2006)
  • R. van Vliet, H.J. Hoogeboom & G. Rozenberg: The construction of minimal DNA expressions, Natural computing 5: 127-149 (2006) doi:10.1007/s11047-005-4464-y

2005

  • J. Kleijn, M. Koutny & G. Rozenberg: Towards a Petri net semantics for membrane systems. In: G. Paun, G. Rozenberg, R. Freund & A. Salomaa (Eds.), Membrane Computing: 6th International Workshop, WMC 2005, Lecture notes in Computer Science 3850: 292-309, Springer (2006) doi:10.1007/11603047_20
  • A. Brandstädt, J. Engelfriet, H.-O. Le & V.V. Lozin: Clique-width for four-vertex forbidden subgraphs. In: Fundamentals of Computation Theory, FCT 2005: 185-196 (2005)
  • R. Breukelaar & T.H.W. Bäck: Neural Networks for Discrete Tomography. In: H.-G. Beyer & U.-M. O'Reilly (Eds.), Proceedings of the Genetic and Evolutionary Computation Conference (GECCO 2005): 107-114, ACM (2005)
  • R. Breukelaar & T.H.W. Bäck: Using a genetic algorithm to evolve behavior in multi dimensional cellular automata: emergence of behavior. In: Proceedings of the Genetic and Evolutionary Computation Conference (GECCO 2005): 107-114 (2005)
  • R. Brijder, H.J. Hoogeboom & G. Rozenberg: The Breakpoint Graph in Ciliates. In: M.R. Berthold, R.C. Glen, K. Diederichs, O. Kohlbacher & I. Fischer (Eds.), CompLife 2005, Lecture Notes in Bioinformatics 3695: 128-139, Springer Verlag (2005) doi:10.1007/11560500_12
  • T.H.W. Bäck, R. Breukelaar & L. Willmes: Problem solving by evolution: One of nature's unconventional programming paradigms. In: J.-P. Banâtre, P. Fradet, J.-L. Giavitto & O. Michel (Eds.), pre-proceedings of Unconventional Programming Paradigms workshop, UPP 2004: 8-13 (2005)
  • T.H.W. Bäck & R. Breukelaar: Using genetic algorithms to evolve behavior in cellular automata. In: C.S. Calude, M.J. Dinneen, G. Paun, M.J. Péréz-Jiménez & G. Rozenberg (Eds.), Proceedings of the 4th International Conference on Unconventional Computing 2005, Lecture Notes in Computer Science 3699: 1-10, Springer-Verlag (2005)
  • C. Calude, G. Paun & G. Rozenberg (Eds.): Contagious Creativity, in Honor of the 80th Birthday of Professor Solomon Marcus, Fundamenta Informaticae 64. Amsterdam, IOS Press (2005)
  • J. Engelfriet & S. Maneth: The equivalence problem for deterministic MSO tree tranducers is decidable. In: R. Ramanujam & S. Sen (Eds.), Foundations of Software Technology and Theoretical Computer Science (FSTTCS 2005), Lecture Notes in Computer Science 3821: 495-504 (2005) doi:10.1007/11590156_40
  • J.M. de Graaf, R.X. de Menezes, J.M. Boer & W.A. Kosters: Frequent Itemsets for Genomic Profiling, Computational Life Sciences. In: M.R. Berthold, R. Glen, K. Diederichs, O. Kohlbacher & I. Fischer (Eds.), Computational Life Sciences, Proceedings of the First International Symposium (CompLife 2005): 104-116 (2005)
  • V. Halava, T. Harju, H.J. Hoogeboom & M. Latteux: Equality sets for recursively enumerable languages, RAIRO Informatique Théorique et Applications 39: 661-675 (2005) doi:10.1051/ita:2005035
  • C.V. Henkel, R.S. Bladergroen, C.I.A. Balog, A.M. Deelder, T. Head, G. Rozenberg & H.P. Spaink: Protein output for DNA computing, Natural computing 4: 1-10 (2005) doi:10.1007/s11047-004-5199-x
  • H.J. Hoogeboom: Klein Duimpje, Eureka! : 18-19 (2005)
  • H.J. Hoogeboom & W.A. Kosters: The Theory of Tetris, Nieuwsbrief van de Nederlandse Vereniging voor Theoretische Informatica 9: 14-21 (2005)
  • F.G.C. Hoogenraad, R.F.J. Holthuizen & R. Brijder: High angular resolution diffusion weighted MRI. Patent no. WO2005076030 (2005)
  • D. Janssens, H.-J. Kreowski & G. Rozenberg: Main Concepts of Networks of Transformation Units with Interlinking Semantics. In: H.-J. Kreowski, U. Montanari, G. Rozenberg & G. Taentzer (Eds.), Formal Methods in Software and Systems Modeling: Essays Dedicated to Hartmut Ehrig on the Occasion of His 60th Birthday, Lecture Notes in Computer Science 3393: 325-342, Springer Verlag (2005) doi:10.1007/b106390
  • H.-J. Kreowski, U. Montanari, F. Orejas, G. Rozenberg & G. Taentzer (Eds.): Formal Methods in Software and systems Modeling: Essays Dedicated to Hartmut Ehrig on the Occasion of His 60th Birthday, Lecture Notes in Computer Science 3393. Berlin, Springer-Verlag (2005) doi:10.1007/b106390
  • E.M.W. Lameijer, T.H.W. Bäck, J.N. Kok & A.P. IJzerman: Evolutionary algorithms in drug design, Natural computing 4: 177-243 (2005)
  • E.M.W. Lameijer, A.P. IJzerman & T.H.W. Bäck: The Molecule Evoluator: an interactive evolutionary algorithm for designing drug molecules. In: H.-G. Beyer & U.-M. O'Reilly (Eds.), Proceedings of the 7th Annual Genetic and Evolutionary Computation Conference (GECCO-2005): 1969-1976. New York, ACM (2005)
  • S.B. Mauri, G. Paun, M.J. Pérez-Jiménez, G. Rozenberg & A. Salomaa (Eds.): Membrane Computing, 5th International workshop, WMC 2004, Milan, Italy, June 14-16, 2004, Revised Selected and Invited Papers, Lecture Notes in Computer Science 3365. Berlin, Springer-Verlag (2005) doi:10.1007/b106721
  • L.J. Meng, P.W.H. van der Putten & H. Wang: A Comprehensive Benchmark of the Artificial Immune Recognition System (AIRS). In: X. Li, S. Wang & Z. Yang Dong (Eds.), Proceedings of the First International Conference on Advanced Data Mining and Applications (ADMA 2005): 575-582 (2005)
  • M. Muskulus & R. Brijder: First Steps towards a Geometry of Computation. In: M.A. Gutiérrez-Naranjo, A. Riscos-Núñez & F.J. Romero-Campero (Eds.), Proceedings of the Third Brainstorming Week on Membrane Computing: 197-218. Sevilla, Fénix Editora (2005)
  • B. Naujoks, N. Beume & M.T.M. Emmerich: Metamodel-assisted SMS-EMOA applied to airfoil optimization tasks. In: Proceedings Evolutionary and Deterministic Methods for Design Optimisation and Control with Applications to Industrial and Societal Problems (EUROGEN'05) (2005)
  • B. Naujoks, N. Beume & M.T.M. Emmerich: Multi-objective optimisation using S-metric selection: Application to three-dimensional solution spaces. In: B. McKay & et al. (Eds.), Proceedings 2005 Congress on Evolutionary Computation (CEC'05) 2: 1282-1289. Piscataway NJ, IEEE Press (2005)
  • M. Preuss, L. Schönemann & M.T.M. Emmerich: Counteracting Genetic Drift and Disruptive Recombination in (mu + lambda)-EA on Multimodal Fitness Landscapes. In: H.-G. Beyer & U.-M. O'Reilly (Eds.), Proceedings of the Genetic and Evolutionary Computation Conference (GECCO 2005): 865-872, ACM (2005)
  • P.W.H. van der Putten & J.N. Kok: Data mining and knowledge discovery. In: R.J. Baatenburg de Jong (Ed.), Prognosis in Head and Neck Cancer, Taylor and Francis (2005)
  • P.W.H. van der Putten & L.J. Meng: Benchmarking the AIRS Artificial Immune System for Classification. In: K. Verbeeck, K. Tuyls, A. Nowé, B. Manderick & B. Kuijpers (Eds.), Proceedings of the 17th Belgian-Dutch Conference on Artificial Inteligence (BNAIC 2005): 393-394 (2005)
  • E. Samsonova, T.H.W. Bäck, J.N. Kok & A.P. IJzerman: Reliable hierarchical clustering with the self-organizing map. In: Proceedings of the 6th International Symposium on Intelligent Data Analysis (IDA 2005): 385-396 (2005)
  • J. Till, G. Sand, S. Engell, M.T.M. Emmerich & L. Schönemann: A hybrid algorithm for solving two-stage stochasticinteger problems by combining evolutionary algorithms and mathematical programming methods. In: L. Puigjaner (Ed.), Proceedings European Symposium Computer Aided Process Engineering (ESCAPE-15), Computer-aided Chemical Engineering: 187-192. Amsterdam, Elsevier (2005)
  • R. van Vliet, H.J. Hoogeboom & G. Rozenberg: Combinatorial aspects of minimal DNA expressions. In: C. Ferretti, G. Mauri & C. Zandron (Eds.), 10th International meeting on DNA computing, DNA10, June 7-10, 2004, Milan, Italy - Revised selected papers, Lecture Notes in Computer Science 3384: 375-388, Springer Verlag (2005) doi:10.1007/11493785_33
  • M.T.M. Emmerich, N. Beume & B. Naujoks: An EMO algorithm using the hypervolume measure as selection criterion. In: C.A. Coello Coello, A. Hernández Aguirre & E. Zitzler (Eds.), Proceedings Evolutionary Multi-Criterion Optimization: Third Int'l Conference (EMO 2005), Lecture notes in Computer Science 3410: 62-76. Berlin, Springer-verlag (2005)
  • E.H. de Graaf & W.A. Kosters: Efficient Feature Detection for Sequence Classification in a Receptor Database. In: Proceedings of the 17th Belgian-Dutch Conference on Artificial Inteligence (BNAIC 2005): 81-88 (2005)
  • E.H. de Graaf & O.R. Kosters: Using a Probable Time Window for Efficient Pattern Mining in a Receptor Database. In: S. Nijssen, T. Meinl & G. Karypis (Eds.), Proceedings of the Third International Workshop on Mining Graphs, Trees and Sequences (MGTS2005): 13-24 (2005)
  • C.V. Henkel, G. Rozenberg & H.P. Spaink: Application of mismatch detection methods in DNA computing, DNA Computing 3384: 159-168 (2005)
  • J. Jakumeit & M.T.M. Emmerich: Inverse modelling and numerical optimization of heater temperatures in a Bridgman process. In: Proceedings of MCWASP Conference Modeling of Casting, Welding and Advanced Solidification Processes XI 2005. 2005 (2005)
  • D. Janssens, H.-J. Kreowski & G. Rozenberg: Main Concepts of Networks of Transformation Units with Interlinking Semantics. In: H.-J. Kreowski, U. Montanari, F. Orejas, G. Rozenberg & G. Taentzer (Eds.), Formal Methods in Software and Systems Modeling: Essays Dedicated to Hartmut Ehrig on the Occasion of His 60th Birthday: 325-342. 2005, Springer-Verlag (2005)
  • O.M. Shir & T.H.W. Bäck: Dynamic niching in evolution strategies with covariance matrix adaptation. In: Proceedings of the 2005 Congress on Evolutionary Computation CEC-2005: 2584-2591. 2005, IEEE-Press (2005)
  • O.M. Shir & T.H.W. Bäck: Niching in evolution strategies. In: H.-G. Beyer & U.-M. O'Reilly (Eds.), Proceedings of the Genetic and Evolutionary Computation Conference (GECCO 2005): 915-916, ACM Press (2005)
Last edited on 09/09/2011 10:37am