LIACS

| 2011 | 2010 | 2009 | 2008 | 2007 | 2006 | 2005 |

2011

• L.M.F. Bertens, J. Slob & F.J. Verbeek: A generic organ based ontology system, applied to vertebrate heart anatomy, development and physiology, Journal of Integrative BioInformatics 8: 167 (2011) doi:10.2390/biecoll-jib-2011-167
• Thijs de Boer & M.H. Lamers: Changing typographic elements of eBooks without disturbing the reader's experience: the basis for a richer story. In: Proceedings of the CHI Sparks Conference 2011 (2011)
• Lu Cao, K. Yan, Leah Winkel, M. de Graauw & F.J. Verbeek: Pattern Recognition in High-Content Cytomics Screens for Target Discovery - Case Studies in Endocytosis. In: Pattern Recognition in Bioinformatics - 6th IAPR International Conference, PRIB 2011, Lecture notes in Computer Science 7036: 330-342 (2011)
• L. Damiano, S.E. Le Devedec, P. Di Stefano, D. Repetto, R. Lalai, H. Truong, J.L. Xiong, E.H. Danen, K. Yan, F.J. Verbeek, E. De Luca, F. Attanasio, R. Buccione, E. Turco, B. van de Water & P. Defilippi: p140Cap suppresses the invasive properties of highly metastatic MTLn3-EGFR cells via impaired cortactin phosphorylation, Oncogene (2011)
• J. Dmitrieva: Aspects of Ontology Visualization and Integration. Leiden University promotor: prof.dr. J.N. Kok & dr.ir. F.J. Verbeek
• M. Hawrylycz, R.A. Baldock, A. Burger, T. Hashikawa, G.A. Johnson, M. Martone, L. Ng, C. Lau, S.D. Larson, J. Nissanov, L. Puelles, S. Ruffins, F.J. Verbeek, I. Zaslavsky & J. Boline: Digital Atlasing and Standardization in the Mouse Brain, PLoS Biology 7: e1001065 (2011)
• H.J. van den Herik, M.H. Lamers & F.J. Verbeek: Understanding the Artificial, International Journal of Social Robotics 3: 107-109 (2011)
• A. Kallergi & F.J. Verbeek: The games Flickrites play: aninvestigation of Flickr-based gaming activity with special focus on opportunities for exploratory interaction. In: Proceedings of the IADIS International Conference Game and Entertainment Technologies 2011: 35-42 (2011)
• M.H. Lamers & F.J. Verbeek: Human-Robot Personal Relationships, Lecture Notes of the Institute for Computer Science, Social Informatics and Telecommunications Engineering 59. Heidelberg Berlin, Springer (2011)
• A.A.J. Oerlemans: Content-based Retrieval of Visual Information. Leiden University promotor: prof.dr. J.N. Kok & dr. M.S. Lew
• A.A.J. Oerlemans & M.S. Lew: RetrievalLab: a programming tool for content based retrieval. In: Proceedings of the 1st International Conference on Multimedia Retrieval, ICMR 2011, ACM (2011)
• Y. Qin, G. Stokman, K. Yan, S. Ramaiahgari, F. Verbeek, M. de Graauw, B. van de Water & L.S. Price: Cyclic AMP signalling protects proximal tubular epithelial cells from cisplatin-induced apoptosis via activation of Epac, Br J Pharmacol (2011)
• Guoping Qiu, Kin-Man Lam, Hitoshi Kyia, Xiangyang Xue, C.C. Jay Kuo & M.S. Lew: Advances in Multimedia Information Processing - PCM 2010 - 11th Pacific Rim Conference on Multimedia, part II, Lecture Notes in Computer Science 6298. Heidelberg, Springer (2011)
• A. Ruhl & M.H. Lamers: Experiments with Galvanic Vestibular Stimulation in Daily Activities: An Informal Look into its Suitability for HCI. In: Proceedings of the CHI Sparks Conference 2011 (2011)
• M.C. Traub & M.H. Lamers: A Semantic Centrality Measure for finding the Most Trustworthy Account, IADIS International Journal on Computer Science an Information Systems 6: 45-57 (2011)
• Yanju Zhang: Heterogeneous Data Analysis for Annotation of microRNAs and Novel Genome Assembly. Leiden University promotor: prof.dr. J.N. Kok & dr.ir. F.J. Verbeek
• Yanju Zhang, E. Stupka, C.V. Henkel, H.J. Jansen, H.P. Spaink & F.J. Verbeek: Identification of Common Carp Innate Immune Genes with Whole-Genome Sequencing and RNA-Seq Data, Journal of Integrative BioInformatics 8 (2011)

• R. Tao & M.S. Lew: Hypothesis based Sub-Image Retrieval. In: Proceedings of Interactive Multimedia Systems (2011)
• Z. Zhou & M.S. Lew: Evaluation of Automatic Tag Classification. In: Proceedings of Interactive Multimedia Systems (2011)

2010

• R. Bathoorn, M. Welten, M. K. Richardson, Arno Siebes & F.J. Verbeek: Frequent Episode Mining to support Pattern Analysis in Developmental Biology. In: 5th IAPR Conference on Pattern Recognition in BioInformatics (PRIB 2010), Lecture Notes in Bioinformatics 6282: 253-263, Springer (2010)
• M. Belmamoune, Dome Potikanond & F.J. Verbeek: Mining and analysing spatio-temporal patterns of gene expression in an integrative database framework, Journal of Integrative BioInformatics 7: 1-10 (2010)
• L.M.F. Bertens, J. Kleijn, M. Koutny & F.J. Verbeek: Modelling Gradients Using Petri Nets. In: Proceedings International Workshop on Biological Processes & Petri Nets (BioPPN) Braga, Portugal, June 21 2010: 55-69 (2010)
• L.M.F. Bertens, H.C.M. Kleijn, M. Koutny & F.J. Verbeek: Modelling Gradients Using Petri Nets, LIACS Technical Report 2010-02, Universiteit Leiden (2010)
• L.M.F. Bertens, M.K. Richardson & F.J. Verbeek: Analysis of cardiac development in the turtle Emys orbicularis (Testudines: Emidydae) using 3D computer modeling and reconstruction based on serial sections, Anatomical Record 293: 1101-1114 (2010)
• J. Dmitrieva & F.J. Verbeek: Creating a new Ontology: a Modular Approach. In: Proceedings SWAT4LS (2010) (2010)
• J. Dmitrieva & F.J. Verbeek: Different Geometries in Ontology Visualization. In: Ming C. Hao Pak C. Wong Jinah Park (Ed.), Visualization and Data Analysis Proceedings SPIE EI 2010 7530: 12 pages (2010)
• S. Giannoulis & F.J. Verbeek: The happiness cube paradigm; eliciting relaxation and happiness through sound, video, light and odor. In: LABS: Leonardo Abstract Service (2010)
• M. Hawrylycz, J. Boline, A. Burger, T. Hashikawa, G.A. Johnson, M. Martone, L. Ng, J. Nissanov, L. Puelles, S. Ruffins, F.J. Verbeek & I. Zaslavsky: The INCF Digital Atlasing Program: Report on Digital Atlasing Standards in the Rodent Brain. In: Nature Preceedings (2010) doi:10.1038/npre.2009.4000
• M.J. Huiskes, B. Thomee & M.S. Lew: New trends and ideas in visual concept detection: the MIR flickr retrieval evaluation initiative. In: Proceedings of the 11th ACM SIGMM International Conference on Multimedia Information Retrieval, MIR 2010: 527-536, ACM (2010)
• A.P.A. de Jong: Apparatus comprising a base and a finger attachment. Patent no. 12/792,432 (2010)
• A.P.A. de Jong: Kinetic surface friction rendering for interactive sonification: an initial exploration. In: ISon 2010: 105-108 (2010)
• A.P.A. de Jong: Presenting the Cyclotactor Project. In: Proceedings of the 4th International Conference on Tangible, Embedded, and Embodied Interaction (TEI 2010),: 319-320, ACM (2010)
• A.P.A. de Jong, J. Jillissen, D. Kirkali, A. de Rooij, H. Schraffenberger & A. Terpstra: One-press control: A tactile input method for pressure-sensitive computer keyboards. In: Ext. Abstracts 28th ACM Conference on Human Factors in Computing Systems (CHI 2010): 4261-4266 (2010)
• A. Kallergi & F.J. Verbeek: Onto-Frogger: The Making Of. In: A. Blandford, J. Guliksen, E.T. Hvannberg, M.K. Larusdottir, E.L.-C. Law & H.H. vVilhjalmsson (Eds.), Proceedings of the 6th Nordic Conference on Human-Computer Interaction: 691-694. Reykjavik, Iceland, ACM Conference Proceedings Series (2010)
• A. Kallergi & F.J. Verbeek: Video Games for Collection Exploration: Games for and out of Data Repositories. In: H. Fransila O. Sorama A. Lugmayr & T. Aaltonen (Eds.), Proceedings of the 14th International Academic MindTrek Conference: Envisioning Future Media Environments: 143-146. Tampere, Finland, ACM Digital Library (2010)
• H. Kim & M.S. Lew: Social webconsciousness. In: Proceedings of the 1st ACM international Workshop on Connected Multimedia: 3-8, ACM (2010)
• S.E. Le Devedec, K. Yan, H. de Bont, V. P. Ghotra, H. Truong, E.H. Danen, F. Verbeek & B. van de Water: Systems microscopy approaches to understand cancer cell migration and metastasis, Cellular and Molecular Life Sciences (2010)
• S. LeDevedec, K. Yan, H. de Bont, V. P. Ghotra, H. Truong, E. H. Danen, F.J. Verbeek & B. van de Water: A Systems Microscopy Approach to Understand Cancer Cell Migration and Metastasis, Journal Cellular and Molecular Life Sciences 2010 67: 3219-3240 (2010)
• Xiaomeng Li & E.M. Bakker: A General Music Summarization Scheme using DHMMs. In: Proceedings of the Sixteenth annual conference of the Advanced School for Computing and Imaging 2010. Delft, ASCI Research School (2010)
• A. Nezhinsky, J.W. Kruisselbrink & F.J. Verbeek: Convex Shape Retrieval from Edge Maps by the use of an Evolutionary Algorithm. In: J. Filipe H. Gamboa A. Fred (Ed.), Proceedings 1st International Conference on Bioinformatics, Valencia, Spain: 221-225 (2010)
• A. Nezhinsky & F.J. Verbeek: Pattern recognition for high throughput zebrafish imaging using genetic algorithm optimization. In: 5th IAPR Conference on Pattern Recognition in BioInformatics (PRIB 2010), Lecture Notes in Bioinformatics 6282: 302-312, Springer (2010)
• A.A.J. Oerlemans & M.S. Lew: Minimum explanation complexity for MOD based visual concept detection. In: Proceedings of the 11th ACM SIGMM International Conference on Multimedia Information Retrieval, MIR 2010: 567-576, ACM (2010)
• G. Qiu, K.M. Lam, H. Kiya, Xiangyang Xue, C.C. Jay Kuo & M.S. Lew: Proceedings Advances in Multimedia Information Processing - PCM 2010 - 11th Pacific Rim Conference on Multimedia, Part I, Lecture Notes in Computer Science 6297. Heidelberg Berlin, Springer (2010)
• J. Slob, A. Kallergi, J. Dmitrieva & F.J. Verbeek: Towards Metadata Patterns in Image Databases. In: Supplementary Proceedings of Pattern Recognition in Bioinformatics, 5th IAPR International Conference, (PRIB2010) (2010)
• B. Thomee, E.M. Bakker & M.S. Lew: TOP-SURF: a visual words toolkit. In: Proceedings of the 18th ACM International Conference on Multimedia (MM'10): 1473-1476 (2010)
• B. Thomee & M.S. Lew: Beyond Google
• M.C. Traub, M.H. Lamers & W. Walter: A Semantic Centrality Measure for Finding the Most Trustworthy Account. In: Proceedings of the IADIS International Conference Informatics 2010: 117-125 (2010)
• K. Yan, L.M.F. Bertens & F.J. Verbeek: Image Registraton and Realignment using Evolutionary Algorithms with High resolution 3D model from Human Liver. In: A.D. Sappa (Ed.), Proceedings 11th IASTED International Conference on Computer Graphics and Imaging (CGIM 2010)},: track 679-014 (2010)
• Y. Zhang, J.S. Bruin de & F.J. Verbeek: Specificity Enhancement in microRNA Target Prediction through Knowledge Discovery. In: V. Kordic (Ed.), Machine Learning (2010)
• Yanju Zhang & F.J. Verbeek: Comparison and Integration of Target Prediction Algorithms for microRNA Studies, Journal of Integrative BioInformatics 7: 1-12 (2010)

2009

• M. Belmamoune: Spatio Temporal Framework for Integrative Analysis of Zebrafish development Studies. Leiden University promotor: prof.dr. J.N. Kok
• L.M.F. Bertens, H.J. Jansen, J. Kleijn, M. Koutny & F.J. Verbeek: Using Petri Nets in Higher Level Development Biology: A case study on the AP axis development in Xenopus laevis. Extended abstract, Technical Report 2009-03. onbekend, LIACS (2009)
• S.A. Brittijn, S.J. Duivesteijn, M. Belmamoune, L.M.F. Bertens, W. Bitter, J. D. de Bruijn, D. L. Champagne, E. Cuppen, G. Flik, C. M. Van den Broucke-Grauls, R. Janssen, I. E. M. de Jong, E. R. De Kloet, A. Kros, A. Meijer, J. R. Metz, A. M. van der Sar, M. J. Schaaf, S. Schulte-Merker, H. P. Spaink, P. P. Tak, F.J. Verbeek, M.J. Vervoordeldonk, F. Vonk, F. Witte, H. Yuan & M.K. Richardson: Zebrafish development and regeneration: new tools for biomedical research, International Journal of Developmental Biology 53: 835-850 (2009)
• S.A. Brittijn, S.J. Duivesteijn, M. Belmamoune, L.M.F. Bertens, W. Bitter, J.D. de Bruijn, D.L. Champagne, E. Cuppen, G. Flik, C.M. Vandenbroucke-Grauls, R.A. Janssen, I.M. de Jong, E.R. de Kloet, A. Kros, A.H. Meijer, J.R. Metz, A.M. van der Sar, M.J.M. Schaaf, S. Schulte-Merker, H.P. Spaink, P.P. Tak, F.J. Verbeek, M.J. Vervoordeldonk, F.J. Vonk, F. Witte, H. Yuan & M.K. Richardson: Zebrafish development and regeneration: new tools for biomedical research., European Journal of Pharmaceutics and Biopharmaceutics 53: 835-850 (2009)
• C. Detweiler & D.J. Broekens: Trust in Online Technology: Towards Practical Guidelines BAsed on Experimentally Verified theory. In: Human Computer Interaction Part III, Lecture notes in Computer Science 5612: 605-614, Springer (2009)
• J. Dmitrieva & F.J. Verbeek: Integration of Information from different ontologies. In: Burger Romano Marshall & Splendiani (Eds.), Proceedings Workshop on Semantic Web Applications and Tools for Life Sciences, CEUR Workshops proceedings 559. Amsterdam (2009)
• J. Dmitrieva & F.J. Verbeek: Multi-view Ontology Visualisation. In: Proceedings 11th International Protege Conference (2009)
• J. Dmitrieva & F.J. Verbeek: Node-Link and Containment Methods in Ontology Visualization. In: Proceedings OWLED 2009 (2009)
• J. Fassaert & M.H. Lamers: Information Design for Getting Difficult Issues Across: From Trial Experiences to Education. In: Proceedings 13th Computer-Human Interaction Netherlands Conference: 43-45 (2009)
• E. Gavrielidou & M.H. Lamers: Landmarks and Time-pressure in Virtual Navigation: Towards Designing Gender-neutral Virtual Environments. In: Facets of Virtual Environments, Lecture Notes of the Institute of Computer Sciences, Social Informatics and Telecommunications Engineering 33: 60-67, Springer (2009)
• S. Giannoulis & F.J. Verbeek: The happiness cube paradigm; eliciting emotions of happiness through sound, video, light and odor. Assessment of affective state with nog invasive techniques. In: Proceedings of 4th International Workshop on Emotion and Computing: Current Research and Future impact: 7-14 (2009)
• M.J. Huiskes & M.S. Lew: Hierarchical Annotation for Large Image Collections. In: Theseus/ImageCLEF Workshop on Visual Information Retrieval Evaluation (2009)
• A. Kallergi, Y. Bei, P. Kok, J. Dijkstra, J.P. Abrahams & F.J. Verbeek: Cyttron: A Virtualized Microscope supporting image integration and knowledge discovery. In: Noteborn, Tavassoli & Backendorf (Eds.), Proteins Killing Tumour Cells, Cell Death and Disease Series: 291-315. Kerala, India, ResearchSignPost (2009)
• A. Kallergi, Y. Bei & F.J. Verbeek: The Ontology Viewer: Facilitating Image Annotation with Ontology Terms in the CSIDx Imaging Database. In: Proceedings VISS-WS 2009 443, CEUR (2009)
• A. Kallergi & F.J. Verbeek: Onto-Frogger: Playing with Semantic Structure. In: Burger Romano Marshall & Splendiani (Eds.), Proceedings Workshop on Semantic Web Applications and Tools of Life Science, CEUR Workshops proceedings. Amsterdam, CEUR-Workshop Porceedings (2009)
• S. Kerhoff van, M.S. Lew & S. Kettley: An exploration of a diversity of vision in digital art projects in relation to issues of engagement. In: Proceedings Fifth European Symposium on Gender and ICT (GICT 2009) (2009)
• A.A.J. Oerlemans, M.S. Lew & E.M. Bakker: Visual Concept Detection using MOD Salient Points. In: Proceedings 21st Benelux Conference on Aritificial Intelligence (2009)
• A.A.J. Oerlemans, Q. Zhang & M.S. Lew: Construction of Texture Features. In: Proceedings 6th IEEE International Symposium on Image and Signal Processing (2009)
• C. Papakonstantinou, I. Panagiotou & F.J. Verbeek: Tag Based Meta-Search for Browsing the Web: The TicTag Application. In: Lenior Steen Verbeek (Ed.), Proceedings CHI-NL: 93-101 (2009)
• C. Papakonstantinou, I. Panagiotou & F.J. Verbeek: The TicTag Application: Towards Tag-based Meta-search-for Browsing the Web. In: Proceedings HCI 2009 People and Computers XXIII - Celebrating people and technology: 354-361. Cambridge, UK, British Computer Society, UK (2009)
• G. Roel, Y.J. Gent, J. Peterson-Maduro, F.J. Verbeek & O. Destree: Lef1 plays a role in patterning the mesoderm and ectoderm in Xenopus tropicals, International Journal of Developmental Biology 53: 81-89 (2009)
• J. Slob, A. Kallergi & F.J. Verbeek: Observations on Semantic Annotation of Micrscope Images for Life Sciences. In: Burger Romano Marshall & Splendiani (Eds.), Proceedings Workshop on Semantic Web Applications and tools for Life Science, CEUR Workshops proceedings 559. Amsterdam (2009)
• J. Slob & M.H. Lamers: The Human Processor: Changing the relation between Human and Computer. In: Proceedings of the 13th Computer-Human Interaction Netherlands Conference: 75-79 (2009)
• B. Thomee, M.J. Huiskes, E.M. Bakker & M.S. Lew: An Exploration-Based Interface for Interactive Image Retrieval. In: Proceedings of the 6th IEEE International Symposium on Image and Signal Processing: 192-197 (2009)
• B. Thomee, M.J. Huiskes, E.M. Bakker & M.S. Lew: Combining Visual Exploration and Searching for Interactive Texture Retrieval. In: Proceedings of the 21st Benelux Conference of Artificial Intelligence: paper 16 (2009)
• B. Thomee, M.J. Huiskes, E.M. Bakker & M.S. Lew: Deep Exploration for Experiential Image Retrieval. In: Proceedings of the 17th International Conference on Multimedia: 673-676 (2009)
• B. Thomee, M.J. Huiskes, E.M. Bakker & M.S. Lew: Large Scale Evaluation of Image Copy Detection Methods. In: Proceedings of the 15th annual conference of the Advanced School for Computing and Imaging: paper 19 (2009)
• K. Yan, S. Le Devedec, B. van de Water & F.J. Verbeek: Cell Tracking and Data Analisys of in vitro Tumour Cells from Time--Lapse Image Sequences. In: Proceedings VISAPP 2009: 281-287 (2009)
• L.W.A. van Hooidonk, M. Ichwan, T.F. Dijkmans, T.G. Schouten, F.J. Verbeek, E. Vreugdenhil & C.P. Fitzsimons: Lentivirus-mediated transgene delivery to the hippocampus reveals sub-field specific differences in expression, BMC Neuroscience 10 (2009)
• L. W. van Hooijdonk, M. Ichwan, T. F. Dijkmans, T. Schouten, M. W. de Backer, R. A. Adan, F.J. Verbeek, E. Vreugdenhil & C. P. Fitzsimons: Lentivirus-mediated transgene delivery to the hippocampus reveals sub-field specific differences in expression, BMC Neuroscience 10: 2 (2009)

2008

• M. Belmamoune & F.J. Verbeek: Data Integration for Spatio-Temporal Patterns of Gene Expression of Zebrafish development: the GEMS database, Journal of Integrative BioInformatics 5 (2008)
• D.J. Broekens, D. DeGroot & W.A. Kosters: Formal models of appraisal: Theory, specification, and computational model, Cognitive Systems Research 9: 173-197 (2008)
• J. Dmitrieva & F.J. Verbeek: Information Visualization from Ontology. In: Proc. 5th international conference on formal ontology in information systems (2008)
• L.W.A. van Hooijdonk, M. Ichwan, T.F. Dijkmans, T.G. Schouten, F.J. Verbeek, E. Vreugdenhil & C.P. Fitzsimons: Lentivirus-mediated transgene delivery to the hippocampus reveals sub-field specific differences in expression, BMC Neuroscience (2008)
• M.J. Huiskes & M.S. Lew: Performance Evaluation of Relevance Feedback Methods. In: ACM International Conference on Image and Video Retrieval: 239-248. New York, ACM (2008)
• M.J. Huiskes & M.S. Lew: The MIR Flickr Retrieval Evaluation. In: ACM International Conference on Multimedia Information Retrieval: 39-43. New York, ACM (2008)
• A. Kallergi & M.H. Lamers: Word-of-Mouth: A Technologically Mediated Agent Provocateur. In: Proceedings of the Nordic Digital Excellence in Museums Conference (NODEM 08) (2008)
• A.A.J. Oerlemans & M.S. Lew: Interest Points Based on Maximization of Distinctiveness. In: ACM International Conference on Multimedia Information Retrieval: 202-207. New York, ACM (2008)
• M.K. Richardson, L.M.F. Bertens, M. Belmamoune & F.J. Verbeek: Zebrafish Developmental Patterning: New Tools for Medical Research, International Journal of Developmental Biology (2008)
• G. Roël, Y.J. Gent, J. Peterson-Maduro, F.J. Verbeek & O. Destrée: Lef1 plays a role in patterning the mesoderm and ectoderm in Xenopus tropicalis, International Journal of Developmental Biology (2008)
• N. Sebe, Q. Tian, M.S. Lew & T.S. Huang: Similarity Matching in Computer Vision and Multimedia, Computer vision and image understanding : CVIU 110: 309-311 (2008)
• B. Thomee, M.J. Huiskes, E.M. Bakker & M.S. Lew: Large Scale Image Copy Evaluation. In: ACM International Conference on Multimedia Information Retrieval: 59-66. New York, ACM (2008)
• B. Thomee, M.J. Huiskes, E.M. Bakker & M.S. Lew: Large scale image copy detection evaluation. In: Multimedia Information Retrieval 2008: 59-66 (2008)
• B. Thomee, M.J. Huiskes, E.M. Bakker & M.S. Lew: Using an Artificial Imagination for Content-Based Image Retrieval. In: Fourteenth Annual Conference of the Advanced School for Computing and Imaging: 116-120 (2008)
• B. Thomee, M.J. Huiskes, E.M. Bakker & M.S. Lew: Using an Artificial Imagination for Texture Retrieval. In: 19th International Conference on Pattern Recognition (2008)
• D. Umanski, W.A. Kosters, F.J. Verbeek & N.O. Schiller: Integrating computer games in speech therapy for children who stutter. In: Proc. 1st Workshop Child, Computer and Interaction (2008)
• F. Witte, M.C.M. Welten, M. Heemskerk, I. van der Stap, L. Ham, C. Rutjes & J.H. Wanink: Major morphological changes in a Lake Victoria fish within two decades, Biological Journal of the Linnean Society 94: 41-52 (2008)
• Y. Zhang, J.S. de Bruin & F.J. Verbeek: miRNA Target Prediction through Mining of miRNA Relationships. In: 8th International Conference on BioInformatics and BioEngineering (2008)
• Y. Zhang, J.M. Woltering & F.J. Verbeek: Screen of MicroRNA Targets in Zebrafish Using Heterogeneous Data Sources: A Case Study for Dre-miR-10 and Dre-miR-196, International Journal of Mathematical, Physical and Engineering Sciences 2: 10-17 (2008)

2007

• Y. Bei, J. Dmitrieva, M. Belmamoune & F.J. Verbeek: Ontology Driven Image Search Engine. In: Hanjalic, A., Schettini, R., Sebe, N. (Ed.), MultiMedia Content Access: Algorithms & Systems, Proceedings of SPIE 6506: 1-10 (2007)
• D.J. Broekens: Affect and Learning: A Computational Analysis. Leiden University (2007-12-18) promotor: prof.dr. J.N. Kok
• D.J. Broekens: Emotion and Reinforcement: Affective Facial Expressions Facilitate Robot Learning. In: LNAI Spec. Vol. on AI for Human Computing 4451: 113-132, Springer (2007)
• D.J. Broekens & P. Haazebroek: Emotion and Reinforcement: Affective Facial Expressions Facilitate Robot Learning. In: IJCAI Workshop on AI for Human Computing (AI4HC'07: 47-54 (2007)
• D.J. Broekens, W.A. Kosters & F.J. Verbeek: Affect, Anticipation, and Adaptation: Affect-Controlled Selection of Anticipatory Simulation in Artificial Adaptive Agents, Adaptive Behavior 15: 397-422 (2007)
• D.J. Broekens, W.A. Kosters & F.J. Verbeek: On Affect and Self-Adaptation: Potential Benefits of Valence-Controlled Action-Selection. In: 2nd. International Work-Conference on the Interplay between Natural and Artificial Computation (IWINAC), Lecture notes in Computer Science 4527: 357-366, Springer (2007)
• D.J. Broekens, W.A. Kosters & F.J. Verbeek: On Affect, Anticipation and Adaptation: Investigating the Potential of Affect-Controlled Selection of Anticipatory Simulation in Artificial Adaptive Agents, Adaptive Behavior 15: 397-422 (2007)
• E. Hogewoning, D.J. Broekens, J. Eggermont & E.G.P. Bovenkamp: Strategies for Affect-Controlled Action-Selection in Soar-RL. In: 2nd International Work-Conference on the Interplay between Natural and Artificial Computation (IWINAC), Lecture notes in Computer Science 4528: 501-510, Springer (2007)
• D.P. Huijsmans: Opvragingen of opgravingen?. In: Ruiter, T. de, Pronk, J. (Ed.), Fotovoorkeuren, Voetnoot (2007)
• M.S. Lew: Visual Information Retrieval: Future Directions and Grand Challenges. In: 9th International Conference, VISUAL 2007, Lecture notes in Computer Science: 1-4 (2007)
• M.S. Lew, E.M. Bakker, N. Sebe & T.S. Huang: Human Computer Intelligent Interaction: A Survey. In: IEEE HCI, IEEE International Workshop, HCI 2007, Lecture notes in Computer Science 4796: 1-5, Springer (2007)
• M.S. Lew, N. Sebe, T.S. Huang & E.M. Bakker: Computer Vision in Human Computer Interaction. In: IEEE HCI - LNCS, IEEE International Workshop, HCI 2007, Lecture notes in Computer Science 4796, Springer (2007)
• M.S. Lew, N. Sebe & T.S. Huang: The Age of Human Computer Interaction, Image and Vision Computing 25: 1833-1835 (2007)
• A.A.J. Oerlemans & M.S. Lew: Texture Classification: What can be done with 1 or 2 features?. In: ASCI: 405-413 (2007)
• A.A.J. Oerlemans, J.T. Rijsdam & M.S. Lew: Real-Time Object Tracking with Relevance Feedback. In: 6th ACM international conference on Image and video retrieval: 101-104, The Netherlands Pages (2007)
• A.A.J. Oerlemans & B. Thomee: Interactive Feedback for Video Tracking Using a Hybrid Maximum Likelihood Similarity Measure. In: Proceedings of the IEEE International Workshop on Human Computer Interaction: 79-87 (2007)
• P.W.H. van der Putten, L.M.F. Bertens, J. Liu, F Hagen, T. Boekhout & F.J. Verbeek: Classification of Yeast Cells from Image Features to Evaluate Pathogen Conditions. In: Hanjalic, A., Schettini, R., Sebe, N. (Ed.), SPIE Vol. 6506 6506: 650601-14 (2007)
• J.T. Rijsdam, A.A.J. Oerlemans & M.S. Lew: A Flight Through Query Space. In: Proc. of ASCI: 422-425 (2007)
• N. Sebe, M.S. Lew, Y. Sun, I. Cohen, T. Gevers & T.S. Huang: Authentic Facial Expression, Image and Vision Computing 25: 1856-1863 (2007)
• B. Thomee, M.J. Huiskes, E.M. Bakker & M.S. Lew: An Artificial Imagination for Interactive Search. In: IEEE HCI, IEEE International Workshop, HCI 2007, Lecture notes in Computer Science 4796: 19-28, Springer (2007)
• B. Thomee, M.J. Huiskes, E.M. Bakker & M.S. Lew: Visual Information Retrieval Using Synthesized Imagery. In: Proceedings of the 6th ACM international conference on Image and video retrieval: 127-130 (2007)
• B. Thomee & M.S. Lew: Relevance Feedback in Content-Based Image Retrieval: Promising Directions. In: Proc. of ASCI: 450-456 (2007)
• B. Thomee & M.S. Lew: The Matrix: Integrating Audio, Visual and 3D Structure in a Real-Time Virtual World. In: Proc. of ASCI: 445-449 (2007)
• M.C.M. Welten: Spatio-temporal gene expression analysis from 3D in situ hybridization images. Leiden University (2007-11-27) promotor: prof.dr. H.P. Spaink, prof.dr. S.M. Verduyn Lunel & dr.ir. F.J. Verbeek
• F. Yu, A.A.J. Oerlemans, E.M. Bakker & M.S. Lew: Automatic Registration of Microtubule Images. In: Proc. of ASCI: 471-476 (2007)
• Y. Zhang, J.M. Woltering & F.J. Verbeek: Screen of MicroRNA Targets in Zebrafish Using Heterogeneous Data Sources: A Case Study for Dre-miR-10 and Dre-miR-196. In: Proceedings WASET, Bangkok (2007)

2006

• Y. Bei, M. Belmamoune & F.J. Verbeek: Ontology and image semantics in multimodal imaging: submission and retrieval. In: Proc. SPIE Internet Imaging VII 6061: C1-C12 (2006)
• M. Belmamoune, L. Lindoorn & F.J. Verbeek: 3D-VisQuS: A 3D Visual Query System integrating semantic and geometric models. In: Vicente P. Guerrero-Bote (Ed.), Current Research in Information Sciences and Technologies, Multidisciplinary approaches to global information systems II: 401-405 (2006)
• M. Belmamoune & F.J. Verbeek: Heterogeneous Information Systems: bridging the gap of time and space. Management and retrieval of spatio-temporal Gene Expression data. In: Vicente P. Guerrero-Bote (Ed.), Current Research in Information Sciences and Technologies, Multidisciplinary approaches to global information systems 1: 53-58 (2006)
• N. Braakman, J. Matysik, S.G. van Duinen, F.J. Verbeek, R Schlebs, H.J. de Groot & A Alia: Longitudinal assessment of Alzheimer's beta-amyloid plaquedevelopment in transgenic mice monitored by in vivo magnetic resonance microimaging, JMRI : Journal of Magnetic Resonance Imaging 24: 530-536 (2006)
• D.J. Broekens, T.K. Cocx & W.A. Kosters: Object-Centered Interactive Multi-Dimensional Scaling: Ask the Expert. In: P.-Y. Schobbens, W. Vanhoof and G. Schwanen (Ed.), BNAIC 2006 (2006)
• D.J. Broekens & J. DeGroot: Formalizing Cognitive Appraisal: From Theory to Computation. In: Cybernetics and Systems Research: 595-600. Vienna, ASCS (2006)
• S.H. Diks, R.J. Bink, S. van de Water, J. Joore, F.J. Verbeek, J. den Hertog, M.P. Peppelenbosch & D. Zivkovic: The novel gene, asb11: a regulator of the size of the neural progenitor compartment, Journal of Cell Biology 174: 581-592 (2006)
• W. van Eck & M.H. Lamers: Animal Controlled Computer Games: Playing Pac-Man Against Real Crickets. In: Entertainment Computing 4161: 31-36 (2006)
• A. Ghafoor, Z. Zhang, M.S. Lew & Z. Zhou: Introduction to machine learning approaches to multimedia information retrieval, ACM Multimedia Systems Journal 12: 1-2 (2006)
• T. Huang, N. Sebe, M.S. Lew, V. Pavlovic, M. Kolsch, A. Galata & B. Kisacanin: Computer Vision in Human-Computer Interaction. In: , Lecture notes in Computer Science 3979. Heidelberg, Springer (2006)
• S. Kabli, A Alia, H.P. Spaink, F.J. Verbeek & H.J.M. de Groot: Magnetic resonance microscopy of the adult zebrafish, Zebrafish 3: 431-439 (2006)
• M.S. Lew, N. Sebe, C. Djeraba & R. Jain: Content-based Multimedia Information Retrieval: State of the Art and Challenges. In: ACM Transactions on Multimedia Computing, Communications, and Applications: 1-19 (2006)
• J. Liu, P.W.H. van der Putten, F Hagen, X. Chen, T. Boekhout & F.J. Verbeek: Detecting virulent cells of Cryptococcus neoformans yeast: clustering experiments. In: International Conference on Pattern Recognition (ICPR), IEEE Computer Society 1: 1112-1115 (2006)
• W. Meuleman, M.C.M. Welten & F.J. Verbeek: Construction of correlation networks with explicit time-slices using time-lagged, variable interval standard and partial correlation coefficients, Lecture notes in Computer Science 4216: 236-246 (2006)
• Q. Mubarak, J. Dmitrieva, T. Vermeulen, Y. Zhou, L.P.J. Groenewegen, S. Basmagi, R. van Beek & F.J. Verbeek: BioTune, a component based repository of BioInformatics teaching modules. In: Méndez-Vilas, A. (Ed.), Proceedings MICTE 2006, FormaText (2006)
• M.C.M. Welten, S.B. de Haan, N. van den Boogert, J.N. Noordermeer, G.E.M. Lamers, H.P. Spaink, A.H. Meijer & F.J. Verbeek: ZebraFISH: Fluorescent in situ hybridization protocol and three-dimensional imaging of gene expression patterns, Zebrafish 3: 465-474 (2006)

2005

• D.J. Broekens: Internal Simulation of Behavior has an Adaptive Advantage. In: Proceedings of the Cognitive Science Conference (CogSci 2005): 342-347 (2005)
• D.J. Broekens & F.J. Verbeek: Simulation, Emotion and Information Processing: Computational Investigations of the Regulative Role of Pleasure in Adaptive Behavior Modeling Natural Action Selection.. In: Proceedings of the Workshop on Modeling Natural Action Selection: 166-173, AISB Press (2005)
• M. Corredor-Adamez, H.P. Welten, H.P. Spaink, J.E. Jeffery, R.T. Schoon, M.A.G. Bakker, C.P. Bagowski, A.H. Meijer, F.J. Verbeek & M.K. Richardson: Genomic annotation and transcriptome analysis of the zebrafish (Danio rerio) hox complex with description of a novel member, Evolution & Development 5: 362-375 (2005)
• C. Djeraba, N. Sebe & M.S. Lew: Systems and Architectures for Multimedia Information Retrieval, ACM Multimedia Systems Journal 10: 457-463 (2005)
• M. de Haas, A.A.J. Oerlemans & M.S. Lew: Relevance Feedback Methods In: Content Based Retrieval And Video Summarization. In: Proceedings of IEEE International Conference on Multimedia and Expo: 1038-1041 (2005)
• D.P. Huijsmans & N. Sebe: How to Complete Performance Graphs in Content-Based Image Retrieval: Add Generality and Normalize Scope, IEEE Transactions on Pattern Analysis and Machine Intelligence 27: 245-251 (2005)
• W. Leow, M.S. Lew, T. Chua & W. Ma: Introduction to Image and Video Retrieval, Proceedings of the International Conference on Image and Video Retrieva (CIVR 2005). Berlin, Springer-Verlag (2005)
• A.A.J. Oerlemans, M.S. Lew & E. Bakker: Detecting and Identifying Moving Objects in Real-Time. In: Proceedings of the Conference of the Advanced School for Computing and Imaging (ASCI): 358-365 (2005)
• M.C.M. Welten, F.J. Verbeek, A.H. Meijer & M.K. Richardson: Gene expression and digit homology in the chicken embryo wing, Evolution & Development 1: 18-28 (2005)

• A.H. Meijer, F.J. Verbeek, E. Salas-Vidal, M. Corredor-Adamez, J. Bussman, A.M. van der Sar, G.W. Otto, R. Geisler & H.P. Spaink: Transcriptome profiling of adult zebrafish at the late stage of chronic tuberculosis due to Mycobacterium marinum infection, Molecular Immunology 42: 1185-1203 (2005)
• M.C.M. Welten, F.J. Verbeek, A.H. Meijer & M.K. Richardson: Gene Expression and Digit Homology in the Chicken Embryo Wing, Evolution & Development 7: 18-28 (2005)