ALG2005.bib

@INPROCEEDINGS{chi05overview,
  AUTHOR = {Yun Chi and Siegfried Nijssen and R. R. Muntz and Joost N. Kok},
  TITLE = {Frequent Subtree Mining--An Overview},
  BOOKTITLE = {Fundamenta Informaticae},
  PAGES = {161--198},
  VOLUME = {66},
  PUBLISHER = {IOS Press},
  YEAR = {2005}
}


@INPROCEEDINGS{henkel05towards,
  AUTHOR = {Christiaan Henkel and Joost N. Kok},
  TITLE = {Towards Evolutionary {DNA} Computing},
  BOOKTITLE = {Lecture Notes in Computer Science},
  VOLUME = {3661},
  PAGES = {244--259},
  YEAR = {2005}
}


@INPROCEEDINGS{neill05pyramidic,
  AUTHOR = {P. O'Neill and K. Fraser and Z. Wang and P. Kellam and J. N. Kok and X. Liu},
  TITLE = {Pyramidic Clustering of Large Scale Microarray Images},
  BOOKTITLE = {The Computer Journal},
  PUBLISHER = {Oxford University Press},
  YEAR = {2005}
}


@INPROCEEDINGS{CompLife,
  AUTHOR = {R. Brijder and H.J. Hoogeboom and G. Rozenberg},
  TITLE = {The Breakpoint Graph in Ciliates},
  BOOKTITLE = {Proceedings of CompLife 2005},
  EDITOR = {M. Berthold et al},
  SERIES = {Lecture Notes in Bioinformatics},
  VOLUME = {3695},
  PAGES = {128--139},
  YEAR = {2005}
}


@ARTICLE{Bladergroen,
  AUTHOR = {C.V. Henkel and R.S. Bladergroen and C.I.A. Balog and A.M. Deelder and T. Head and G. Rozenberg and H. Spaink},
  TITLE = {Protein input for DNA computing},
  JOURNAL = {Natural Computing},
  VOLUME = {4},
  PAGES = {1--10},
  YEAR = {2005}
}


@PHDTHESIS{Henkel,
  AUTHOR = {C.V. Henkel},
  TITLE = {Experimental DNA Computing},
  SCHOOL = {Leiden University},
  YEAR = {2005}
}


@INPROCEEDINGS{WMC2004,
  EDITOR = {G. Mauri and G. Paun and M.J. P\'erez--Jim\'enez and G. Rozenberg and A. Salomaa},
  BOOKTITLE = {Membrane Computing 5th International Workshop WMC 2004 Milan Italy June 14--16 2004. Revised Selected and Invited Papers},
  SERIES = {Lecture Notes in Computer Science},
  VOLUME = {3365},
  PUBLISHER = {Springer--Verlag},
  YEAR = {2005}
}


@INPROCEEDINGS{Rudy,
  AUTHOR = {R. van Vliet and H.J. Hoogeboom and G. Rozenberg},
  TITLE = {Combinatorial aspects of minimal DNA expressions},
  BOOKTITLE = {10th International meeting on DNA computing DNA10 June 7--10 2004 Milan Italy -- Revised selected papers},
  EDITOR = {C. Ferretti and G. Mauri and C. Zandron},
  SERIES = {Lecture Notes in Computer Science},
  VOLUME = {3384},
  PAGES = {375--388},
  PUBLISHER = {Springer--Verlag},
  YEAR = {2005}
}


@INPROCEEDINGS{Breukelaar05,
  AUTHOR = {Ron Breukelaar and Thomas B\"{a}ck},
  EDITOR = {Hans-Georg Beyer and Una-May O'Reilly},
  TITLE = {Using a genetic algorithm to evolve behavior in multi dimensional cellular automata: emergence of behavior},
  BOOKTITLE = {Genetic and Evolutionary Computation Conference, GECCO 2005, Proceedings, Washington DC, USA,},
  PAGES = {107-114},
  PUBLISHER = {ACM},
  YEAR = {2005}
}


@INPROCEEDINGS{Shir05,
  AUTHOR = {Ofer M. Shir and Thomas B\"{a}ck},
  EDITOR = {Hans-Georg Beyer and Una-May O'Reilly},
  TITLE = {Niching in evolution strategies},
  BOOKTITLE = {Genetic and Evolutionary Computation Conference, GECCO 2005, Proceedings, Washington DC, USA,},
  PAGES = {915-916},
  PUBLISHER = {ACM},
  YEAR = {2005}
}


@INCOLLECTION{Samsonova05,
  AUTHOR = {Elena V. Samsonova and Thomas B\"{a}ck and Joost N. Kok and Adriaan P. IJzerman},
  TITLE = {Reliable Hierarchical Clustering with the Self-organizing Map},
  BOOKTITLE = {IDA 2005},
  PAGES = {385-396},
  YEAR = {2005}
}


@INPROCEEDINGS{Back05,
  AUTHOR = {Thomas B\"{a}ck and Ron Breukelaar},
  EDITOR = {Cristian S. Calude and Michael J. Dinneen and Gheorghe Paun and Mario J. P\'{e}r\'{e}z-Jim\'{e}nez and Grzegorz Rozenberg},
  TITLE = {Using Genetic Algorithms to Evolve Behavior in Cellular Automata},
  BOOKTITLE = {UC 2005 Computation: 4th International Conference, UC 2005, Sevilla, Spain},
  SERIES = {Lecture Notes in Computer Science},
  VOLUME = {3699},
  PAGES = {1-10},
  PUBLISHER = {Springer-Verlag GmbH},
  YEAR = {2005}
}


@BOOK{Famili05,
  AUTHOR = {A. Fazel Famili and Joost N. Kok and Jos\'{e} Manuel Pe\~{n}a and Arno Siebes and A. J. Feelders},
  TITLE = {Advances in Intelligent Data Analysis {VI}, 6th International Symposium on Intelligent Data Analysis,     {IDA} 2005, Madrid, Spain, September 8-10, 2005, Proceedings},
  PUBLISHER = {Springer},
  YEAR = {2005}
}


@INPROCEEDINGS{Lameijer05,
  AUTHOR = {Eric-Wubbo Lameijer and Adriaan P. IJzerman and Joost N. Kok},
  EDITOR = {Hans-Georg Beyer and Una-May O'Reilly},
  TITLE = {The molecule evoluator: an interactive evolutionary algorithm for designing drug molecules},
  BOOKTITLE = {Genetic and Evolutionary Computation Conference, GECCO 2005, Proceedings, Washington DC, USA,},
  PAGES = {1969-1976},
  PUBLISHER = {ACM},
  YEAR = {2005}
}


@ARTICLE{Washio05,
  AUTHOR = {Takashi Washio and Luc De Raedt and Joost N. Kok},
  TITLE = {Advances in Mining Graphs, Trees and Sequences},
  JOURNAL = {Fundamenta Informaticae},
  VOLUME = {66},
  YEAR = {2005}
}


@BOOK{Raedt05,
  EDITOR = {L. De Raedt and T. Washio and J.N. Kok},
  TITLE = {Advances in Mining Graphs, Trees and Sequences},
  SERIES = {Frontiers in Artificial Intelligence and Applications},
  VOLUME = {124},
  MONTH = JUN,
  YEAR = {2005}
}


@INPROCEEDINGS{Samsonova05a,
  AUTHOR = {E.V. Samsonova and J.N. Kok and A.P. IJzerman},
  TITLE = {TreeSOM: Cluster Analysis in the Self-Organizing Map},
  BOOKTITLE = {5th Workshop on Self-Organizing Maps (WSOM)},
  PAGES = {429--438},
  YEAR = {2005}
}


@INCOLLECTION{Lameijer05a,
  AUTHOR = {Eric-Wubbo Lameijer and Ad IJzerman and Joost Kok},
  TITLE = {Using data mining to improve mutation in a tool for molecular evolution},
  BOOKTITLE = {2005 IEEE Congress on Evolutionary Computation},
  YEAR = {2005}
}


@ARTICLE{Lameijer05b,
  AUTHOR = {Eric-Wubbo Lameijer and Thomas B\"{a}ck and Joost N. Kok and Ad P. Ijzerman},
  TITLE = {Evolutionary Algorithms in Drug Design},
  JOURNAL = {Natural Computing},
  VOLUME = {4},
  PAGES = {177--243},
  YEAR = {2005}
}


@ARTICLE{Bohte05,
  AUTHOR = {Sander M. Bohte and Joost N. Kok},
  TITLE = {Applications of spiking neural networks,},
  JOURNAL = {Information Processing Letters,},
  VOLUME = {95},
  PAGES = {519--520},
  YEAR = {2005}
}


@INPROCEEDINGS{Shir05a,
  AUTHOR = {Ofer Shir and Christian Siedschlag and Thomas B\"{a}ck and Marc J.J. Vrakking},
  TITLE = {Niching in Evolution Strategies and its Application to Laser Pulse Shaping},
  BOOKTITLE = {EA'05, The 7th International Conference on Artificial Evolution, Lille, France},
  YEAR = {2005}
}


@INCOLLECTION{Shir05b,
  AUTHOR = {Ofer Shir and Thomas B\"{a}ck},
  TITLE = {Dynamic Niching in Evolution Strategies with Covariance Matrix Adaptation},
  BOOKTITLE = {IEEE CEC 2005, Edinburgh, Scotland},
  YEAR = {2005}
}


@INPROCEEDINGS{Shir05c,
  AUTHOR = {Ofer Shir and Thomas B\"{a}ck},
  EDITOR = {Hans-Georg Beyer and Una-May O'Reilly},
  TITLE = {Niching in Evolution Strategies},
  BOOKTITLE = {Genetic and Evolutionary Computation Conference, GECCO 2005, Proceedings, Washington DC, USA,},
  PUBLISHER = {ACM},
  YEAR = {2005}
}


@INPROCEEDINGS{Bck05,
  AUTHOR = {Thomas B\"{a}ck and Ron Breukelaar and Lars Willmes},
  EDITOR = {Jean-Pierre Ban\^atre and Pascal Fradet and Jean-Louis Giavitto and Olivier Michel},
  TITLE = {Problem Solving by Evolution: One of Nature's Unconventional Programming Paradigms},
  BOOKTITLE = {pre-proceedings of Unconventional Programming Paradigms workshop, UPP 2004},
  PAGES = {8--13},
  PUBLISHER = {Springer-Verlag GmbH},
  YEAR = {2005}
}


@INPROCEEDINGS{graaf05bnaic,
  AUTHOR = {Edgar H. de Graaf and Walter A. Kosters},
  TITLE = {Efficient Feature Detection for Sequence Classification in a Receptor Database},
  BOOKTITLE = {Proceedings of BNAIC 2005, Brussels, Belgium},
  PAGES = {81--88},
  PUBLISHER = {Universa Press},
  YEAR = {2005},
  MONTH = OCT,
  EDITOR = {K. Verbeeck and K. Tuyls and A. Now\'e and B. Manderick and B. Kuijpers}
}


@INPROCEEDINGS{graaf05mgts,
  AUTHOR = {Edgar H. de Graaf and Walter A. Kosters},
  TITLE = {Using a Probable Time Window for Efficient Pattern Mining in a Receptor Database},
  BOOKTITLE = {Proceedings of the Third International Workshop on Mining Graphs, Trees and Sequences MGTS2005, Porto, Portugal},
  PAGES = {13--24},
  YEAR = {2005},
  EDITOR = {S. Nijssen, T. Meinl and G. Karypis}
}


@INPROCEEDINGS{bako2005,
  AUTHOR = {K.J. Batenburg and W.A. Kosters},
  TITLE = {Neural Networks for Discrete Tomography},
  BOOKTITLE = {Proceedings of BNAIC 2005, Brussels, Belgium},
  YEAR = {2005},
  MONTH = OCT,
  PAGES = {21--27},
  EDITOR = {K. Verbeeck and K. Tuyls and A. Nowé and B. Manderick and B. Kuijpers}
}


@INPROCEEDINGS{grmeboko2005,
  AUTHOR = {J.M. de Graaf and Ren\'ee X. de Menezes and J.M. Boer and W.A. Kosters},
  TITLE = {Frequent Itemsets for Genomic Profiling},
  BOOKTITLE = {Proceedings of the First International Symposium on Computational Life Sciences, CompLife 2005, Konstanz, Germany},
  YEAR = {2005},
  MONTH = SEP,
  EDITOR = {M.R. Berthold and R. Glen and K. Diederichs and O. Kohlbacher and I. Fischer},
  SERIES = {Lecture Notes in Computer Science},
  VOLUME = {3695},
  PAGES = {104--116}
}